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Table 2 QTLs associated with the response of barley seedlings to salt stress in the NT population. Results from CIM are presented

From: A major QTL on chromosome 7HS controls the response of barley seedling to salt stress in the Nure × Tremois population

Chromosome

Name

Trait

QTL intervala

Peak marker

Position (cM)

LOD

R 2 (%)

Additive effectb

1H

QTL1

SL-Salt 50

35.0-38.3

bPb-8884

38.3

3.40

12.7

−4.42

SL-Salt 40

36.0–38.3

bPb-8884

38.3

3.21

11.6

−4.46

SL-Salt 80

38.3–39.8

bPb-0482

39.8

3.31

12.4

−4.24

SL-Salt 70

38.3–39.8

bPb-0482

39.8

3.46

12.9

−4.34

SL-Salt 60

38.3–39.8

bPb-0482

39.8

3.49

13.0

−4.40

3H

QTL2

SL-Control

133.7–138.9

Bmag0013

138.9

3.49

11.6

0.22

5H

QTL3

RL-Control

46.5–47.4

bPb-6260

47.4

3.91

10.9

−0.19

RL-L max

46.5–47.4

bPb-6260

47.4

4.29

15.8

−0.20

7H

QTL4

RL-Control

3.7–8.8

Contig_41777

7.8

4.45

16.3

0.23

QTL5

RL-Salt 80

17.2–17.8

Contig_2179585

17.8

15.05

45.3

12.99

RL-Salt 70

17.2–17.8

Contig_2179585

17.8

14.94

45.0

12.74

RL-Salt 60

17.2–17.8

Contig_405119

17.2

14.58

44.2

12.27

RL-Salt 50

17.2–17.8

Contig_405119

17.2

13.77

42.4

11.67

RL-Salt 40

17.2–17.8

Contig_405119

17.2

12.19

38.6

10.82

  1. aQTL intervals are defined according to LOD threshold >3
  2. bPositive sign indicates that Nure allele increases phenotypic value