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Table 2 Chromosome-wide significant SNPs for PSL (new)

From: Genome-wide association study identifies candidate genes for piglet splay leg syndrome in different populations

SNP

Location

(SSC:bp)

MAF

(case/control)

Nearest gene

Strand

Distance to the nearest genes (bp)

Raw p value

ASGA0001519

1:21,382,287

0.461/0.455

RAB32

−

40,041

9.32E-06

ALGA0014296

2:89,825,751

0.240/0.455

JMY/ HOMER1

+/−

15,695/18609

3.61E-06

ALGA0014308

2:89,995,349

0.240/0.455

HOMER1

−

0

3.61E-06

H3GA0022494

7:98,558,186

0.253/0.107

ENSSSCP00000021921

+

235,866

7.31E-06

ALGA0087037

15:131,897,923

0.356/0.482

TNP1

−

97,522

3.64E-06

MARC0003725

15:131,919,478

0.445/0.420

TNP1

−

119,107

8.44E-06

MARC0006026

16:33,866,754

0.323/0.205

ITGA1

+

74,317

8.71E-06