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Table 1 Information about identified SNPs of ATF3 and CDKN1A genes

From: Determination of genetic effects of ATF3 and CDKN1A genes on milk yield and compositions in Chinese Holstein population

Gene

Gene region

SNPs

Position (UMD 3.1)

Allele

Amino acid missence

GenBank no.

Origin

ATF3

5′ promoter region

g.72834301C > A

chr16:72,834,301

C/A

 

rs41634778

NCBI

g.72834229C > A

chr16:72,834,229

C/A

 

rs41634777

NCBI

g.72833969A > G

chr16:72,833,969

A/G

 

rs41823579

NCBI

g.72833562G > T

chr16:72,833,562

G/T

 

rs41823578

NCBI

exon 4

c.291G > A

chr16:72,822,913

G/A

 

rs209694892

NCBI

exon 5

c.489G > A

chr16:72,821,334

G/A

 

rs207598277

NCBI

3’UTR

c.*190A > G

chr16:72,821,087

A/G

 

rs136869959

NCBI

c.*321G > C

chr16:72,820,956

G/C

 

rs135704995

NCBI

c.*326A > G

chr16:72,820,951

A/G

 

rs137084971

NCBI

c.*640G > A

chr16:72,820,637

G/A

 

rs210941907

NCBI

c.*685G > C

chr16:72,820,592

G/C

 

rs209048412

NCBI

c.*735 T > C

chr16:72,820,542

T/C

 

rs210174407

NCBI

c.*1064G > A

chr16:72,820,213

G/A

 

rs211390316

NCBI

3′ flanking region

g.72819977 T > C

chr16:72,819,977

T/C

 

rs208866610

NCBI

g.72819850A > G

chr16:72,819,850

A/G

 

rs211185269

NCBI

g.72818819A > G

chr16:72,818,819

A/G

 

rs41823568

NCBI

g.72818818C > T

chr16:72,818,818

C/T

 

rs41823569

NCBI

g.72818292 T > C

chr16:72,818,292

T/C

 

rs209896483

NCBI

g.72818161 T > C

chr16:72,818,161

T/C

 

rs210138925

NCBI

CDKN1A

exon 5

c.271C > T

chr23:10,565,335

C/T

p.Arg91Trp

rs442346530

NCBI

3’UTR

c.*9C > G

chr23:10,567,031

C/G

 

rs210197882

NCBI

c.*654C > T

chr23:10,567,676

C/T

 

rs110284249

NCBI

3’flanking region

g.10569766 T > C

chr23:10,569,766

T/C

 

rs133659402

NCBI

g.10569779 T > C

chr23:10,569,779

T/C

 

rs110283961

NCBI