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Table 1 Descriptive features of GBS data generated with two methods of library construction

From: Low-depth genotyping-by-sequencing (GBS) in a bovine population: strategies to maximize the selection of high quality genotypes and the accuracy of imputation

  Total Library construction
Conventional primers Selective primers
Raw reads   191,912,978 163,583,652
Mapped reads   186,122,054 159,145,610
GBS variants   272,103 123,666
  Average call rate (n = 46) 0.352 [0.140–0.501] 0.159 [0.078–0.260]
Common with SNP50 1604 756