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Table 1 Descriptive features of GBS data generated with two methods of library construction

From: Low-depth genotyping-by-sequencing (GBS) in a bovine population: strategies to maximize the selection of high quality genotypes and the accuracy of imputation

 

Total

Library construction

Conventional primers

Selective primers

Raw reads

 

191,912,978

163,583,652

Mapped reads

 

186,122,054

159,145,610

GBS variants

 

272,103

123,666

 

Average call rate (n = 46)

0.352 [0.140–0.501]

0.159 [0.078–0.260]

Common with SNP50

1604

756

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BMC Genomic Data

ISSN: 2730-6844

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