|
First Marker a
|
Position b
|
Haplotype
|
-log10(p)
|
(p)B
c
|
OR d
|
0.95 CI e
|
|---|
|
ARS-BFGL-NGS-40630
|
60800770
|
AGAGC
|
0.57
|
1
|
0.65
|
0.30–1.40
|
|
GAGGC
|
0.02
|
1
|
1.02
|
0.46–2.27
|
|
GGAGC
|
1.16
|
1
|
0.28
|
0.07–1.20
|
|
AAAGA
|
7.63
|
0.0085
|
7.90
|
3.46–18.04
|
|
AGAAC
|
0.15
|
1
|
0.67
|
0.09–5.24
|
|
AAAGC
|
0.54
|
1
| | |
|
AAGGC
|
0.45
|
1
|
0.04
| |
|
ARS-BFGL-NGS-115798
|
60823250
|
GAGCA
|
0.52
|
1
|
0.67
|
0.31–1.44
|
|
AGGCA
|
0.10
|
1
|
0.90
|
0.40–2.00
|
|
GAGCC
|
1.21
|
1
|
0.27
|
0.06–1.17
|
|
AAGAA
|
7.62
|
0.0087
|
7.90
|
3.46–18.04
|
|
GAACA
|
0.19
|
1
|
0.61
|
0.08–4.78
|
|
AAGCC
|
0.54
|
1
| | |
|
ARS-BFGL-NGS-12436
|
60872538
|
AGCAA
|
0.51
|
1
|
0.67
|
0.31–1.45
|
|
GGCAA
|
0.10
|
1
|
0.90
|
0.40–1.99
|
|
AGCCG
|
1.57
|
1
|
0.22
|
0.05–0.95
|
|
AGAAA
|
7.62
|
0.0087
|
7.90
|
3.46–18.04
|
|
AACAG
|
0.19
|
1
|
0.61
|
0.08–4.78
|
|
ARS-BFGL-NGS-102
|
60952836
|
GCAAA
|
0.68
|
1
|
0.64
|
0.31–1.30
|
|
GCCGA
|
0.71
|
1
|
0.39
|
0.09–1.70
|
|
GAAAA
|
7.72
|
0.0069
|
7.99
|
3.50–18.23
|
|
GCCGG
|
1.14
|
1
| | |
|
ACAGA
|
0.19
|
1
|
0.62
|
0.08–4.83
|
|
BTB-00352779
|
60990733
|
CAAAG
|
0.76
|
1
|
0.61
|
0.30–1.25
|
|
CCGAG
|
0.68
|
1
|
0.40
|
0.09–1.75
|
|
AAAAA
|
7.97
|
0.0038
|
8.31
|
3.62–19.08
|
|
CCGGG
|
1.12
|
1
| | |
|
CAGAG
|
0.18
|
1
|
0.64
|
0.08–4.96
|
-
a A moving window of 5 SNPs was used to determine haplotype associations. Each haplotype begins with the listed first SNP followed by four of the following consecutive SNPs: ARS-BFGL-NGS-40630, ARS-BFGL-NGS-115798, ARS-BFGL-NGS-12436, ARS-BFGL-NGS-102, BTB-00352779, Hapmap39688-BTA-81545, Hapmap49326-BTA-81546, ARS-BFGL-NGS-55438, Hapmap36177-SCAFFOLD210634_2319
-
b Positions according to NCBI UMD3.1.1
-
c Bonferroni corrected p-value
-
d OR: Odds ratio
-
e 95% confidence interval upper and lower limit
