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Table 2 Genomic regions identified with regional heritability mapping (100-SNP windows) affecting three bovine tuberculosis traits. Phenotype 1, positive reactors to the skin test with positive post-mortem results; phenotype 2, positive reactors to the skin test regardless of post-mortem results; phenotype 3, as phenotype 2 plus non-reactors and inconclusive reactors with positive post-mortem examination results

From: Genomic regions underlying susceptibility to bovine tuberculosis in Holstein-Friesian cattle

Phenotype

BTA

Genomic regions (SNP name and position (bp))

LRT

h2 r(SE)

Start

End

1

18

Hapmap57004-rs29011610

ARS-BFGL-NGS-1116

9.41b

0.06(0.03)

 

4463083

9539002

  

2

23

ARS-BFGL-NGS-78313

30222836

BTA-56563-no-rs

38412668

15.12a

0.05(0.03)

23

ARS-BFGL-NGS-107881

33961556

BTB-00870908

41672507

20.41a

0.07(0.03)

23

Hapmap31420-BTA-137383

38521106

ARS-BFGL-NGS-41732

44897933

9.27b

0.05(0.03)

3

ARS-BFGL-84593

114388249

ARS-BFGL-NGS-26427

119113936

9.48b

0.07(0.03)

3

23

ARS-BFGL-NGS-78313

30222836

BTA-56563-no-rs

38412668

15.98a

0.05(0.03)

23

ARS-BFGL-NGS-107881

33961556

BTB-00870908

41672507

21.37a

0.08(0.03)

23

Hapmap31420-BTA-137383

38521106

ARS-BFGL-NGS-41732

44897933

9.76b

0.05(0.03)

3

ARS-BFGL-84593

114388249

ARS-BFGL-NGS-26427

119113936

10.37b

0.08(0.04)

  1. h 2 r regional heritability, SE standard error
  2. aGenome-wide significance level; bSuggestive significance level