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Table 5 List of genes that locate inside significant regions or are in the proximity of the significant SNPs not included in any of the three regions

From: Whole-genome association analysis of pork meat pH revealed three significant regions and several potential genes in Finnish Yorkshire pigs

SNP1

Chr2

Position

Region

Genes

Distance (kb)3

ALGA0105074

3

39433703

Region 1

NLRC3, TRAP1, SLX4, LOC100738967/CREBBP, LOC100738923/CREBBP, LOC100738884/ADCY9, DNASE1, CREBBP, CLUAP1 and C3H16orf90

Inside

H3GA0009309

3

39858459

ALGA0018568

3

39881683

M1GA0004302

3

39992614

MARC0023922

3

40003536

ALGA0018563

3

40047077

ASGA0014287

3

40128902

ALGA0112278

15

58515874

Region 2

TTI2, RNF122, MAK16, LOC102164955/NRG1, LOC102164569/NRG1, LOC100739280/NRG1, LOC100739161/MPHOSPH6, LOC100620584/NRG3 and DUSP26

Inside

ASGA0106157

15

58532159

MARC0098560

15

58565300

ASGA0069641

15

59674662

H3GA0044376

15

59725649

ALGA0085452

15

59799712

ASGA0069650

15

60417583

ASGA0069653

15

60473765

ALGA0106581

15

118661914

-

-

-

MARC0105925

15

129430060

-

-

-

MARC0012403

15

130228158

-

-

-

H3GA0044925

15

131637011

-

LOC100738836/IGFBP5

2.091

ALGA0087027

15

131665582

-

IGFBP5

16.680

ALGA0087009

15

131697805

-

IGFBP5

13.200

ALGA0087013

15

131713164

-

-

-

ASGA0070510

15

131722929

-

-

-

ASGA0070514

15

131745271

-

-

-

ALGA0087030

15

131795839

-

TNP1

4.532

INRA0050208

15

131966813

-

-

-

ASGA0070535

15

132116033

-

-

-

ASGA0070533

15

132171976

-

-

-

INRA0050231

15

132240930

-

-

-

ASGA0070538

15

132271433

-

-

-

H3GA0044934

15

132293605

-

-

-

INRA0050226

15

132352056

-

-

-

ALGA0123666

15

132411519

-

-

-

ASGA0101786

15

132418651

-

-

-

ASGA0070540

15

132520074

-

-

-

ASGA0070545

15

132590789

-

-

-

ASGA0070549

15

132703653

-

-

-

ALGA0087060

15

132730376

-

-

-

ALGA0087067

15

132782065

-

-

-

ASGA0070571

15

133052815

-

TNS1

Inside

LOC100514326/tensin-1-like

Inside

ASGA0070560

15

133072097

-

TNS1

Inside

LOC100514326/tensin-1-like

Inside

H3GA0044951

15

133118381

-

LOC102160493/tensin-1-like

Inside

LOC100514326/tensin-1-like

Inside

TNS1

7.489

ASGA0070582

15

133138277

-

LOC102160493/tensin-1-like

Inside

LOC100514326/tensin-1-like

Inside

ASGA0070586

15

133160977

-

LOC102160493/tensin-1-like

10.500

LOC100514326/tensin-1-like

Inside

ALGA0087116

15

133342361

Region 3

ZNF142, USP37, TTLL4, STK36, SLC11A1, RQCD1, RNF25, PRKAG3, PLCD4, NHEJ1, LOC102163340/CCDC108, LOC102163099/CCDC108, LOC102162367/tubulin polyglutamylase TTLL4-like, LOC102162096/ZNF142, LOC102161979/mitochondrial chaperone BCS1, LOC102161492/VIL1, PNKD, LOC100739763/PRKAG3, AAMP, GPBAR1, TMBIM1, LOC100739428, WNT10A, VIL1, IHH, CYP27A1, CRYBA2, CDK5R2, CCDC108, C15H2orf62 and ARPC2

Inside

ALGA0087118

15

133355327

ASGA0070623

15

133493709

DRGA0015508

15

133534807

ASGA0070634

15

133640599

ASGA0070625

15

133677385

MARC0083357

15

133738342

DBUN0002708

15

133836471

MARC0039273

15

133964455

ASGA0070646

15

133970166

DIAS0002965

15

134006845

ASGA0070665

15

134156879

ASGA0070668

15

134189442

MARC0009333

15

134397712

-

-

-

  1. 1Non-significant SNPs that included in the three regions are marked in italics. 2CHR: chromosome. 3Distance from the closest significant SNP