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Table 5 List of genes that locate inside significant regions or are in the proximity of the significant SNPs not included in any of the three regions

From: Whole-genome association analysis of pork meat pH revealed three significant regions and several potential genes in Finnish Yorkshire pigs

SNP1 Chr2 Position Region Genes Distance (kb)3
ALGA0105074 3 39433703 Region 1 NLRC3, TRAP1, SLX4, LOC100738967/CREBBP, LOC100738923/CREBBP, LOC100738884/ADCY9, DNASE1, CREBBP, CLUAP1 and C3H16orf90 Inside
H3GA0009309 3 39858459
ALGA0018568 3 39881683
M1GA0004302 3 39992614
MARC0023922 3 40003536
ALGA0018563 3 40047077
ASGA0014287 3 40128902
ALGA0112278 15 58515874 Region 2 TTI2, RNF122, MAK16, LOC102164955/NRG1, LOC102164569/NRG1, LOC100739280/NRG1, LOC100739161/MPHOSPH6, LOC100620584/NRG3 and DUSP26 Inside
ASGA0106157 15 58532159
MARC0098560 15 58565300
ASGA0069641 15 59674662
H3GA0044376 15 59725649
ALGA0085452 15 59799712
ASGA0069650 15 60417583
ASGA0069653 15 60473765
ALGA0106581 15 118661914 - - -
MARC0105925 15 129430060 - - -
MARC0012403 15 130228158 - - -
H3GA0044925 15 131637011 - LOC100738836/IGFBP5 2.091
ALGA0087027 15 131665582 - IGFBP5 16.680
ALGA0087009 15 131697805 - IGFBP5 13.200
ALGA0087013 15 131713164 - - -
ASGA0070510 15 131722929 - - -
ASGA0070514 15 131745271 - - -
ALGA0087030 15 131795839 - TNP1 4.532
INRA0050208 15 131966813 - - -
ASGA0070535 15 132116033 - - -
ASGA0070533 15 132171976 - - -
INRA0050231 15 132240930 - - -
ASGA0070538 15 132271433 - - -
H3GA0044934 15 132293605 - - -
INRA0050226 15 132352056 - - -
ALGA0123666 15 132411519 - - -
ASGA0101786 15 132418651 - - -
ASGA0070540 15 132520074 - - -
ASGA0070545 15 132590789 - - -
ASGA0070549 15 132703653 - - -
ALGA0087060 15 132730376 - - -
ALGA0087067 15 132782065 - - -
ASGA0070571 15 133052815 - TNS1 Inside
LOC100514326/tensin-1-like Inside
ASGA0070560 15 133072097 - TNS1 Inside
LOC100514326/tensin-1-like Inside
H3GA0044951 15 133118381 - LOC102160493/tensin-1-like Inside
LOC100514326/tensin-1-like Inside
TNS1 7.489
ASGA0070582 15 133138277 - LOC102160493/tensin-1-like Inside
LOC100514326/tensin-1-like Inside
ASGA0070586 15 133160977 - LOC102160493/tensin-1-like 10.500
LOC100514326/tensin-1-like Inside
ALGA0087116 15 133342361 Region 3 ZNF142, USP37, TTLL4, STK36, SLC11A1, RQCD1, RNF25, PRKAG3, PLCD4, NHEJ1, LOC102163340/CCDC108, LOC102163099/CCDC108, LOC102162367/tubulin polyglutamylase TTLL4-like, LOC102162096/ZNF142, LOC102161979/mitochondrial chaperone BCS1, LOC102161492/VIL1, PNKD, LOC100739763/PRKAG3, AAMP, GPBAR1, TMBIM1, LOC100739428, WNT10A, VIL1, IHH, CYP27A1, CRYBA2, CDK5R2, CCDC108, C15H2orf62 and ARPC2 Inside
ALGA0087118 15 133355327
ASGA0070623 15 133493709
DRGA0015508 15 133534807
ASGA0070634 15 133640599
ASGA0070625 15 133677385
MARC0083357 15 133738342
DBUN0002708 15 133836471
MARC0039273 15 133964455
ASGA0070646 15 133970166
DIAS0002965 15 134006845
ASGA0070665 15 134156879
ASGA0070668 15 134189442
MARC0009333 15 134397712 - - -
  1. 1Non-significant SNPs that included in the three regions are marked in italics. 2CHR: chromosome. 3Distance from the closest significant SNP