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Table 4 Haplotypes in the 58.5 Mb–60.5 Mb region on chromosome 15 and their association (b) with pH

From: Whole-genome association analysis of pork meat pH revealed three significant regions and several potential genes in Finnish Yorkshire pigs

Haplotype

Nucleotides1

Frequency2

b

SE

P-value

1

GAGGGAAAGGGGAAGAACAAAGGAGAGGGAGAAAG

0.25

8.59E-03

4.59E-03

NS3

2

GAGGGAAGAAGGAAAGACAAAAGAGAAAGAGAAAG

0.22

4.30E-03

4.36E-03

NS

3

GAGGAGGGAGGGAAGGACAAGAAAGAAGGAGAAAG

0.16

1.07E-03

5.38E-03

NS

4

GAGGAGGGAGGGGAAGACAAGAAGAGGAGAGAAAG

0.13

5.58E-03

5.42E-03

NS

5

GAGGGAAAGGGGGAAGACAAGAAGAGGAGAGAAAG

0.08

-5.27E-03

6.26E-03

NS

6

GGAAGAAAGGGGAAGACGGGAGGAGAAAGGAAGAA

0.05

-3.63E-02

8.00E-03

6.69E-06

7

AAGGGGGGAGAAGGGGCCGGGGGAAGGGAAGAGAG

0.05

-2.15E-02

8.98E-03

0.02

8

GAGGAGGGAAGGAAGGCGAAGAGAGAAAGAGAAAG

0.03

-2.25E-03

1.43E-02

NS

9

GAGGGAAAGGGGGAAGACAAGAGGGAAGGGAGACG

0.03

2.15E-02

1.12E-02

NS

  1. 1The SNPs are: INRA0049382, ALGA0112278, ASGA0106157, MARC0098560, DRGA0015140, DRGA0015141, ALGA0085422, MARC0044358, ALGA0085430, ALGA0085436, ALGA0085439, INRA0049399, ALGA0085441, ALGA0085442, MARC0043488, DRGA0015145, ASGA0069641, ALGA0085445, H3GA0044376, ALGA0085452, MARC0000855, ASGA0069644, ALGA0085462, H3GA0044381, INRA0049414, H3GA0044383, MARC0071088, ALGA0085464, ALGA0085465, MARC0073466, INRA0049417, DRGA0015149, ASGA0069650, ALGA0085471, ASGA0069653. 2Only haplotypes with a frequency greater than 1% are presented. 3NS = not significant