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Table 3 Haplotypes in the 39.4 Mb–40.1 Mb region on chromosome 3 and their association with pH

From: Whole-genome association analysis of pork meat pH revealed three significant regions and several potential genes in Finnish Yorkshire pigs

Haplotype

Nucleotides1

Frequency

b2

SE

P-value

1

AGAACAAA

0.50

1.76E-02

3.60E-03

1.26E-06

2

GGGGAGGG

0.45

-1.53E-02

3.73E-03

4.58E-05

3

GAGGAGGG

0.05

-1.39E-02

8.23E-03

NS3

4

AGAGAGGG

<0.01

-1.88E-02

2.01E-02

NS

  1. 1The SNPs are: ALGA0105074, ALGA0114510, H3GA0009309, ALGA0018568, M1GA0004302, MARC0023922, ALGA0018563, ASGA0014287. 2Effect of the haplotype. 3NS = not significant
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BMC Genomic Data

ISSN: 2730-6844

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