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Table 1 Significant (in bold) and close to significant SNPs on chromosomes 3 and 15

From: Whole-genome association analysis of pork meat pH revealed three significant regions and several potential genes in Finnish Yorkshire pigs

SNP Chr Position, bp MAF CR Allele ba SE n P-value
ALGA0105074 3 39433703 0.50 0.967 G 1.75E-02 3.68E-03 692 2.43E-06
H3GA0009309 3 39858459 0.50 0.999 G 1.75E-02 3.66E-03 702 2.13E-06
ALGA0018568 3 39881683 0.50 1.000 A -1.80E-02 3.63E-03 703 9.14E-07
M1GA0004302 3 39992614 0.48 0.952 A 1.81E-02 3.70E-03 674 1.28E-06
MARC0023922 3 40003536 0.50 1.000 A -1.80E-02 3.63E-03 703 9.14E-07
ALGA0018563 3 40047077 0.50 0.978 A -1.74E-02 3.66E-03 693 2.44E-06
ASGA0014287 3 40128902 0.50 0.995 A -1.80E-02 3.63E-03 701 8.87E-07
ALGA0112278 15 58515874 0.06 1.000 G -3.61E-02 7.48E-03 703 1.70E-06
ASGA0106157 15 58532159 0.06 1.000 A -3.61E-02 7.48E-03 703 1.70E-06
MARC0098560 15 58565300 0.06 0.994 A -3.51E-02 7.52E-03 694 3.65E-06
ASGA0069641 15 59674662 0.13 1.000 C -2.62E-02 5.58E-03 703 3.30E-06
H3GA0044376 15 59725649 0.10 1.000 G -3.08E-02 6.07E-03 703 4.91E-07
ALGA0085452 15 59799712 0.10 1.000 G -3.08E-02 6.07E-03 703 4.91E-07
ASGA0069650 15 60417583 0.11 1.000 G -3.12E-02 5.83E-03 703 1.16E-07
ASGA0069653 15 60473765 0.06 0.988 A -3.72E-02 7.54E-03 694 1.04E-06
ALGA0106581 15 118661914 0.12 1.000 G -2.97E-02 5.43E-03 703 6.07E-08
MARC0105925 15 129430060 0.32 1.000 G 2.22E-02 4.27E-03 703 2.71E-07
MARC0012403 15 130228158 0.35 1.000 A 1.90E-02 3.97E-03 703 1.93E-06
H3GA0044925 15 131637011 0.18 0.999 A 2.39E-02 4.79E-03 703 7.56E-07
ALGA0087027 15 131665582 0.18 1.000 G -2.39E-02 4.79E-03 703 7.56E-07
ALGA0087009 15 131697805 0.19 1.000 G -2.28E-02 4.72E-03 703 1.61E-06
ALGA0087013 15 131713164 0.18 1.000 A 2.39E-02 4.79E-03 703 7.56E-07
ASGA0070510 15 131722929 0.18 1.000 A 2.39E-02 4.79E-03 703 7.56E-07
ASGA0070514 15 131745271 0.17 0.957 G -2.36E-02 4.84E-03 679 1.27E-06
ALGA0087030 15 131795839 0.16 1.000 G -2.88E-02 5.78E-03 488 8.87E-07
INRA0050208 15 131966813 0.18 0.999 G -2.39E-02 4.79E-03 703 7.56E-07
ASGA0070535 15 132116033 0.18 1.000 A 2.39E-02 4.79E-03 703 7.56E-07
ASGA0070533 15 132171976 0.18 1.000 G -2.39E-02 4.79E-03 703 7.56E-07
INRA0050231 15 132240930 0.18 1.000 A 2.39E-02 4.79E-03 703 7.56E-07
ASGA0070538 15 132271433 0.18 1.000 G 2.39E-02 4.79E-03 703 7.56E-07
H3GA0044934 15 132293605 0.18 1.000 C -2.39E-02 4.79E-03 703 7.56E-07
INRA0050226 15 132352056 0.18 1.000 G -2.39E-02 4.79E-03 703 7.56E-07
ALGA0123666 15 132411519 0.18 1.000 A 2.39E-02 4.79E-03 703 7.56E-07
ASGA0101786 15 132418651 0.18 1.000 G -2.39E-02 4.79E-03 703 7.56E-07
ASGA0070540 15 132520074 0.18 1.000 A 2.39E-02 4.79E-03 703 7.56E-07
ASGA0070545 15 132590789 0.17 0.999 A 2.54E-02 4.79E-03 702 1.60E-07
ASGA0070549 15 132703653 0.17 0.996 A 2.54E-02 4.81E-03 700 1.70E-07
ALGA0087060 15 132730376 0.18 0.989 A 2.55E-02 4.85E-03 695 1.92E-07
ALGA0087067 15 132782065 0.18 1.000 A 2.54E-02 4.79E-03 703 1.59E-07
ASGA0070571 15 133052815 0.12 1.000 G -4.11E-02 5.25E-03 703 1.89E-14
ASGA0070560 15 133072097 0.13 1.000 A -3.95E-02 4.98E-03 703 8.24E-15
H3GA0044951 15 133118381 0.14 0.999 G -3.72E-02 4.89E-03 702 9.11E-14
ASGA0070582 15 133138277 0.13 1.000 G -3.95E-02 4.98E-03 703 8.24E-15
ASGA0070586 15 133160977 0.40 0.995 G -2.05E-02 3.87E-03 701 1.65E-07
ALGA0087116 15 133342361 0.14 0.999 A -4.10E-02 4.95E-03 702 6.00E-16
ALGA0087118 15 133355327 0.12 0.994 G -4.12E-02 5.26E-03 700 1.80E-14
ASGA0070623 15 133493709 0.38 0.999 G 1.88E-02 3.82E-03 702 1.10E-06
DRGA0015508 15 133534807 0.11 0.970 A -4.14E-02 5.41E-03 680 7.34E-14
ASGA0070634 15 133640599 0.13 0.999 A 4.22E-02 5.13E-03 702 8.78E-16
ASGA0070625 15 133677385 0.13 1.000 A -4.17E-02 5.11E-03 703 1.52E-15
MARC0083357 15 133738342 0.13 1.000 C -4.17E-02 5.11E-03 703 1.52E-15
DBUN0002708 15 133836471 0.13 0.957 A 4.12E-02 5.16E-03 689 5.70E-15
MARC0039273 15 133964455 0.13 1.000 A -4.17E-02 5.11E-03 703 1.52E-15
ASGA0070646 15 133970166 0.12 0.988 A -4.14E-02 5.18E-03 694 5.59E-15
DIAS0002965 15 134006845 0.13 1.000 G -4.17E-02 5.11E-03 703 1.52E-15
ASGA0070665 15 134156879 0.12 0.998 A -4.31E-02 5.26E-03 701 1.29E-15
ASGA0070668 15 134189442 0.12 1.000 G -4.32E-02 5.25E-03 703 8.21E-16
MARC0009333 15 134397712 0.28 0.999 A -2.02E-02 4.13E-03 702 1.33E-06
  1. aEffect of the minor allele, given in the column “Allele”
  2. Chromosome (Chr), Minor allele frequency (MAF), Call rate (CR)