Table 1 Significant (in bold) and close to significant SNPs on chromosomes 3 and 15
SNP | Chr | Position, bp | MAF | CR | Allele | ba | SE | n | P-value |
|---|---|---|---|---|---|---|---|---|---|
ALGA0105074 | 3 | 39433703 | 0.50 | 0.967 | G | 1.75E-02 | 3.68E-03 | 692 | 2.43E-06 |
H3GA0009309 | 3 | 39858459 | 0.50 | 0.999 | G | 1.75E-02 | 3.66E-03 | 702 | 2.13E-06 |
ALGA0018568 | 3 | 39881683 | 0.50 | 1.000 | A | -1.80E-02 | 3.63E-03 | 703 | 9.14E-07 |
M1GA0004302 | 3 | 39992614 | 0.48 | 0.952 | A | 1.81E-02 | 3.70E-03 | 674 | 1.28E-06 |
MARC0023922 | 3 | 40003536 | 0.50 | 1.000 | A | -1.80E-02 | 3.63E-03 | 703 | 9.14E-07 |
ALGA0018563 | 3 | 40047077 | 0.50 | 0.978 | A | -1.74E-02 | 3.66E-03 | 693 | 2.44E-06 |
ASGA0014287 | 3 | 40128902 | 0.50 | 0.995 | A | -1.80E-02 | 3.63E-03 | 701 | 8.87E-07 |
ALGA0112278 | 15 | 58515874 | 0.06 | 1.000 | G | -3.61E-02 | 7.48E-03 | 703 | 1.70E-06 |
ASGA0106157 | 15 | 58532159 | 0.06 | 1.000 | A | -3.61E-02 | 7.48E-03 | 703 | 1.70E-06 |
MARC0098560 | 15 | 58565300 | 0.06 | 0.994 | A | -3.51E-02 | 7.52E-03 | 694 | 3.65E-06 |
ASGA0069641 | 15 | 59674662 | 0.13 | 1.000 | C | -2.62E-02 | 5.58E-03 | 703 | 3.30E-06 |
H3GA0044376 | 15 | 59725649 | 0.10 | 1.000 | G | -3.08E-02 | 6.07E-03 | 703 | 4.91E-07 |
ALGA0085452 | 15 | 59799712 | 0.10 | 1.000 | G | -3.08E-02 | 6.07E-03 | 703 | 4.91E-07 |
ASGA0069650 | 15 | 60417583 | 0.11 | 1.000 | G | -3.12E-02 | 5.83E-03 | 703 | 1.16E-07 |
ASGA0069653 | 15 | 60473765 | 0.06 | 0.988 | A | -3.72E-02 | 7.54E-03 | 694 | 1.04E-06 |
ALGA0106581 | 15 | 118661914 | 0.12 | 1.000 | G | -2.97E-02 | 5.43E-03 | 703 | 6.07E-08 |
MARC0105925 | 15 | 129430060 | 0.32 | 1.000 | G | 2.22E-02 | 4.27E-03 | 703 | 2.71E-07 |
MARC0012403 | 15 | 130228158 | 0.35 | 1.000 | A | 1.90E-02 | 3.97E-03 | 703 | 1.93E-06 |
H3GA0044925 | 15 | 131637011 | 0.18 | 0.999 | A | 2.39E-02 | 4.79E-03 | 703 | 7.56E-07 |
ALGA0087027 | 15 | 131665582 | 0.18 | 1.000 | G | -2.39E-02 | 4.79E-03 | 703 | 7.56E-07 |
ALGA0087009 | 15 | 131697805 | 0.19 | 1.000 | G | -2.28E-02 | 4.72E-03 | 703 | 1.61E-06 |
ALGA0087013 | 15 | 131713164 | 0.18 | 1.000 | A | 2.39E-02 | 4.79E-03 | 703 | 7.56E-07 |
ASGA0070510 | 15 | 131722929 | 0.18 | 1.000 | A | 2.39E-02 | 4.79E-03 | 703 | 7.56E-07 |
ASGA0070514 | 15 | 131745271 | 0.17 | 0.957 | G | -2.36E-02 | 4.84E-03 | 679 | 1.27E-06 |
ALGA0087030 | 15 | 131795839 | 0.16 | 1.000 | G | -2.88E-02 | 5.78E-03 | 488 | 8.87E-07 |
INRA0050208 | 15 | 131966813 | 0.18 | 0.999 | G | -2.39E-02 | 4.79E-03 | 703 | 7.56E-07 |
ASGA0070535 | 15 | 132116033 | 0.18 | 1.000 | A | 2.39E-02 | 4.79E-03 | 703 | 7.56E-07 |
ASGA0070533 | 15 | 132171976 | 0.18 | 1.000 | G | -2.39E-02 | 4.79E-03 | 703 | 7.56E-07 |
INRA0050231 | 15 | 132240930 | 0.18 | 1.000 | A | 2.39E-02 | 4.79E-03 | 703 | 7.56E-07 |
ASGA0070538 | 15 | 132271433 | 0.18 | 1.000 | G | 2.39E-02 | 4.79E-03 | 703 | 7.56E-07 |
H3GA0044934 | 15 | 132293605 | 0.18 | 1.000 | C | -2.39E-02 | 4.79E-03 | 703 | 7.56E-07 |
INRA0050226 | 15 | 132352056 | 0.18 | 1.000 | G | -2.39E-02 | 4.79E-03 | 703 | 7.56E-07 |
ALGA0123666 | 15 | 132411519 | 0.18 | 1.000 | A | 2.39E-02 | 4.79E-03 | 703 | 7.56E-07 |
ASGA0101786 | 15 | 132418651 | 0.18 | 1.000 | G | -2.39E-02 | 4.79E-03 | 703 | 7.56E-07 |
ASGA0070540 | 15 | 132520074 | 0.18 | 1.000 | A | 2.39E-02 | 4.79E-03 | 703 | 7.56E-07 |
ASGA0070545 | 15 | 132590789 | 0.17 | 0.999 | A | 2.54E-02 | 4.79E-03 | 702 | 1.60E-07 |
ASGA0070549 | 15 | 132703653 | 0.17 | 0.996 | A | 2.54E-02 | 4.81E-03 | 700 | 1.70E-07 |
ALGA0087060 | 15 | 132730376 | 0.18 | 0.989 | A | 2.55E-02 | 4.85E-03 | 695 | 1.92E-07 |
ALGA0087067 | 15 | 132782065 | 0.18 | 1.000 | A | 2.54E-02 | 4.79E-03 | 703 | 1.59E-07 |
ASGA0070571 | 15 | 133052815 | 0.12 | 1.000 | G | -4.11E-02 | 5.25E-03 | 703 | 1.89E-14 |
ASGA0070560 | 15 | 133072097 | 0.13 | 1.000 | A | -3.95E-02 | 4.98E-03 | 703 | 8.24E-15 |
H3GA0044951 | 15 | 133118381 | 0.14 | 0.999 | G | -3.72E-02 | 4.89E-03 | 702 | 9.11E-14 |
ASGA0070582 | 15 | 133138277 | 0.13 | 1.000 | G | -3.95E-02 | 4.98E-03 | 703 | 8.24E-15 |
ASGA0070586 | 15 | 133160977 | 0.40 | 0.995 | G | -2.05E-02 | 3.87E-03 | 701 | 1.65E-07 |
ALGA0087116 | 15 | 133342361 | 0.14 | 0.999 | A | -4.10E-02 | 4.95E-03 | 702 | 6.00E-16 |
ALGA0087118 | 15 | 133355327 | 0.12 | 0.994 | G | -4.12E-02 | 5.26E-03 | 700 | 1.80E-14 |
ASGA0070623 | 15 | 133493709 | 0.38 | 0.999 | G | 1.88E-02 | 3.82E-03 | 702 | 1.10E-06 |
DRGA0015508 | 15 | 133534807 | 0.11 | 0.970 | A | -4.14E-02 | 5.41E-03 | 680 | 7.34E-14 |
ASGA0070634 | 15 | 133640599 | 0.13 | 0.999 | A | 4.22E-02 | 5.13E-03 | 702 | 8.78E-16 |
ASGA0070625 | 15 | 133677385 | 0.13 | 1.000 | A | -4.17E-02 | 5.11E-03 | 703 | 1.52E-15 |
MARC0083357 | 15 | 133738342 | 0.13 | 1.000 | C | -4.17E-02 | 5.11E-03 | 703 | 1.52E-15 |
DBUN0002708 | 15 | 133836471 | 0.13 | 0.957 | A | 4.12E-02 | 5.16E-03 | 689 | 5.70E-15 |
MARC0039273 | 15 | 133964455 | 0.13 | 1.000 | A | -4.17E-02 | 5.11E-03 | 703 | 1.52E-15 |
ASGA0070646 | 15 | 133970166 | 0.12 | 0.988 | A | -4.14E-02 | 5.18E-03 | 694 | 5.59E-15 |
DIAS0002965 | 15 | 134006845 | 0.13 | 1.000 | G | -4.17E-02 | 5.11E-03 | 703 | 1.52E-15 |
ASGA0070665 | 15 | 134156879 | 0.12 | 0.998 | A | -4.31E-02 | 5.26E-03 | 701 | 1.29E-15 |
ASGA0070668 | 15 | 134189442 | 0.12 | 1.000 | G | -4.32E-02 | 5.25E-03 | 703 | 8.21E-16 |
MARC0009333 | 15 | 134397712 | 0.28 | 0.999 | A | -2.02E-02 | 4.13E-03 | 702 | 1.33E-06 |