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Fig. 1 | BMC Genetics

Fig. 1

From: Identification of effector-like proteins in Trichoderma spp. and role of a hydrophobin in the plant-fungus interaction and mycoparasitism

Fig. 1

Bioinformatic pipeline for the identification of effector proteins in Trichoderma spp. The pipeline is composed of five major steps. Step 1 (box 1), extracellular proteins where predicted using the Secretor algorithm (designed and constructed for this work). Step 2 (box 2), functional annotation of the extracellular proteins, using Pfam database and InterPro pipelines. Step 3 (box 3) individual extracellular proteins where searched for translocation and nuclear localization signal motifs. Step 4 (box 4), individual extracellular proteins where annotated using current knowledge of effector properties. Step 5 (box 5), ranking and classification of the effector candidates based on the different effector properties matched by each protein. Tv, Trichoderma virens; Ta, Trichoderma atroviride; Tr, Trichoderma reseei

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