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Table 2 List of all of MHC IIB alleles found in the Midas cichlid

From: Molecular characterization of MHC class IIB genes of sympatric Neotropical cichlids

Samples

AM05

AM06

AH65

AL11

AL64

AQ72

27D3

25D8

27G4

25A2

25D1

25B2

27E7

Total Sequences

Template Allele

gDNA

gDNA

gDNA

gDNA

gDNA

gDNA

gDNA

cDNA

gDNA

cDNA

cDNA

gDNA

cDNA

gDNA

cDNA

gDNA

cDNA

gDNA

cDNA

Amci-DXB*000101

12

13

69

3

 

21

46

            

164

Amci-DXB*000102

71

10

49

 

13

77

4

            

224

Amci-DXB*000103

1

    

1

             

2

Amci-DXB*000104

1

  

1

               

2

Amci-DXB*000105

1

 

1

                

2

Amci-DXB*000106

 

1

   

2

             

3

Amci-DXB*000107

  

1

  

1

             

2

Amci-DXB*000108

  

1

  

1

             

2

Amci-DXB*0002

1

   

1

              

2

Amci-DXB*0003

1

 

1

        

1

       

3

Amci-DXB*0004

  

1

1

 

1

13

            

16

Amci-DXB*0005

      

2

            

2

Amci-DXB*0006

  

2

  

1

2

            

5

Amci-DXB*0007

1

   

1

              

2

Amci-DXB*0008

2

1

  

1

              

4

Amci-DXB*0009

  

1

  

1

             

2

Amci-DXB*0010

   

1

 

1

             

2

Amci-DXB*0011

 

1

1

                

2

Amci-DXB*0012

  

1

  

1

1

            

3

Amci-DXB*0013

  

1

1

               

2

Amci-DXB*0101

  

2

2

 

3

1

 

2

          

10

Amci-DXB*0102

5

 

2

2

1

9

             

19

Amci-DXB*0201

      

39

    

1

   

4

   

44

Amci-DXB*0202

      

17

    

14

   

26

1

  

58

Amci-DXB*0203

        

6

  

6

       

12

Amci-DXB*03

           

26

   

1

   

27

Amci-DXB*040101

9

1

4

 

2

13

7

 

4

  

9

   

10

 

2

 

61

Amci-DXB*040102

5

1

5

3

1

     

17

   

3

 

8

  

43

Amci-DXB*040103

1

    

1

             

2

Amci-DXB*0402

1

    

1

             

2

Amci-DXB*040301

   

3

2

1

 

1

 

25

    

3

 

7

  

42

Amci-DXB*040302

  

1

  

1

             

2

Amci-DXB*040303

2

    

16

13

            

31

Amci-DXB*040304

   

3

8

 

18

            

29

Amci-DXB*040305

           

4

       

4

Amci-DXB*0404

2

    

1

             

3

Amci-DXB*0405

      

3

26

   

1

  

16

 

20

  

66

Amci-DXB*0406

       

1

      

1

    

2

Amci-DXB*05

  

1

                

1

Amci-DXB*060101

       

1

    

43

1

31

2

42

 

16

136

Amci-DXB*060102

            

1

 

1

    

2

Amci-DXB*0602

            

1

 

6

    

7

Amci-DXB*0603

         

5

        

3

8

Amci-DXB*0604

 

1

            

1

   

16

18

Amci-DXB*07

            

2

      

2

Amci-DXB*08

             

1

40

    

41

Amci-DXB*09

         

50

        

9

59

Amci-DXB*1001

              

1

   

25

26

Amci-DXB*1002

              

1

    

1

Amci-DXB*110101

      

31

42

           

73

Amci-DXB*110102

       

2

           

2

Amci-DXB*1102

       

8

           

8

Amci-DXB*12

         

1

    

19

    

20

Amci-DXB*13

          

1

        

1

Amci-DXB*14

                  

38

38

Amci-DXB*15

         

16

         

16

Amci-DXB*16

      

4

       

34

    

38

Amci-DXB*17

      

4

18

           

22

Amci-DXB*18

           

17

44

  

23

50

  

134

Amci-DXB*19

                

9

  

9

Amci-DXB*20

                  

2

2

Amci-DXB*21

              

2

    

2

Amci-DXB*2201

      

2

23

           

25

Amci-DXB*2202

       

2

           

2

Amci-DXB*23

       

2

           

2

Amci-DXB*2401

       

13

           

13

Amci-DXB*25

           

1

   

3

   

4

Amci-DXB*26

         

6

         

6

Amci-DXB*27

2

                  

2

Total sequences

118

29

144

20

30

154

207

139

12

103

18

80

91

2

159

69

137

2

109

1623

Total Alleles

17

8

18

10

9

20

25

9

2

14

14

11

8

69

  1. Alleles found in 13 Midas cichlid samples (listed on the top) showing number of copies recovered per allele amplified in gDNA and cDNA in each individual. All alleles except DXB*05, DXB*1002, DXB*0402, and DXB*13 were confirmed with at least two independent PCR reactions. At the bottom we summarize total number of sequences and total number of alleles obtained