From: Molecular characterization of MHC class IIB genes of sympatric Neotropical cichlids
Forward | Primer Reverse Primer | TA | Fragment |
---|---|---|---|
SatoGa11_mod1 | MHC Rev3 | 59 °C | E2 - E3 |
AACTCCACKGAKCTGAAGRAC | GATCTGTTTGGGGTAGAAGTCG | ||
GAIIEx2startF | MHC Rev3 | 55 °C | E2 - E3 |
GTCTTTAACTCCACGGAGCTGAAGG | GATCTGTTTGGGGTAGAAGTCG | ||
GAIIEx2startF | AcMHCIIBR1 | 59 °C | E2 - E3 |
GTCTTTAACTCCACGGAGCTGAAGG | GGRGTGAAGTCTGACTRATGG | ||
AaMHCIIBE1F1b | MHC Rev3 | 56 °C | E1 - E3 |
ATGGCTYCATCCTTYMTC | GATCTGTTTGGGGTAGAAGTCG | ||
AaMHCIIBE1F1b | AcMHCIIBR4 | 59 °C | E1 - E5 |
ATGGCTYCATCCTTYMTC | ACCCAGGATCAGTCCTGAGG | ||
AcMHCIIBF2 (excludes group I) | AcMHCIIBR3 (excludes gop I) | 64 °C | E2 - E2/I2 |
TTAACTCCACKGAGCTGAASGACA | GAYGATGAAYCATAACTCACCTGAT | ||
AcMHCIIBF3 (only group I) | AcMHCIIBR4 | 46 °C | E2/I2 - E5 |
TCAGGTGAGTYATGDTTCATC | ACCCAGGATCAGTCCTGAGG | ||
AcMHCIIBF3 (only group I) | AcMHCIIBR5 | 44 °C | E2/I2 - R5 |
TCAGGTGAGTYATGDTTCATC | TTCCTCTTGTAGTAGATGAATCC | ||
AcMHCIIBF4 (excludes goup I) | AcMHCIIBR4 | 54 °C | E2/I2 - E5 |
TCAGGTGAGTCTGTTTCTGTG | ACCCAGGATCAGTCCTGAGG | ||
AcMHCIIBF5 (excludes group I) | MHC Rev3 | 55 °C | E2 - E3 |
CCACKGAGCTGAASGACATSGAG | GATCTGTTTGGGGTAGAAGTCG | ||
AcMHCIIBF5 (excludes group I) | AcMHCIIBR4 | 59 °C | E2 - E5 |
CCACKGAGCTGAASGACATSGAG | ACCCAGGATCAGTCCTGAGG | ||
AcMHCIIBF7 | AcMHCIIBR9 | 50 °C | E2 - E2 |
CGAGTACGTTCGATCTTTGTATTGC | DCTGATTTAGTCAGAGCAGTCT | ||
AcMHCIIBF8 | AcMHCIIBR9 | 55 °C | E2 - E2 |
CGAGTWCATCARVTCTTACTAYTWC | DCTGATTTAGTCAGAGCAGTCT | ||
AcMHCIIBF9 | AcMHCIIBR8 | NA | I2 - I2 |
GAAACCTGTTCACAGCAGTCCCTC | CATGTGCTACATGCAACATATCA | ||
AcMHCIIBF6 | MHC Rev3 | 55 °C | E2 - E3 |
CCACTGAGCTGAASGACATSGAG | GATCTGTTTGGGGTAGAAGTCG |