TY - BOOK PY - 1998 DA - 1998// TI - Handbook of Vertebrate Immunology. San Diego, California 92101-4495 PB - Academic CY - USA ID - ref1 ER - TY - JOUR AU - Dixon, B. AU - Erp, S. H. M. AU - Rodrigues, P. N. S. AU - Egberts, E. AU - Stet, R. J. M. PY - 1995 DA - 1995// TI - Fish major histocompatibility complex genes: an expansion JO - Dev Comp Immunol VL - 19 UR - https://doi.org/10.1016/0145-305X(94)00056-L DO - 10.1016/0145-305X(94)00056-L ID - Dixon1995 ER - TY - BOOK AU - Janeway, C. A. AU - Travers, P. AU - Walport, M. PY - 2005 DA - 2005// TI - Immunobiology: the immune system in health and disease ID - Janeway2005 ER - TY - JOUR AU - Madden, D. R. PY - 1995 DA - 1995// TI - The three-dimensional structure of peptide-mhc complexes JO - Annu Rev Immunol VL - 13 UR - https://doi.org/10.1146/annurev.iy.13.040195.003103 DO - 10.1146/annurev.iy.13.040195.003103 ID - Madden1995 ER - TY - JOUR AU - Ono, H. AU - O’hUigin, C. AU - Vincek, V. AU - Klein, J. PY - 1993 DA - 1993// TI - Exon-intron organization of fish major histocompatibility complex class II B genes JO - Immunogenetics VL - 38 ID - Ono1993 ER - TY - JOUR AU - Schwaiger, F. W. AU - Weyers, E. AU - Epplen, C. AU - Brün, J. AU - Ruff, G. AU - Crawford, A. PY - 1993 DA - 1993// TI - The paradox of MHC-DRB exon/intron evolution: alpha-helix and beta-sheet encoding regions diverge while hypervariable intronic simple repeats coevolve with beta-sheet codons JO - J Mol Evol VL - 37 UR - https://doi.org/10.1007/BF00175503 DO - 10.1007/BF00175503 ID - Schwaiger1993 ER - TY - JOUR AU - Reusch, T. B. H. AU - Langefors, A. PY - 2005 DA - 2005// TI - Inter- and intralocus recombination drive MHC class IIB gene diversification in a teleost, the three-spined stickleback Gasterosteus aculeatus JO - J Mol Evol VL - 61 UR - https://doi.org/10.1007/s00239-004-0340-0 DO - 10.1007/s00239-004-0340-0 ID - Reusch2005 ER - TY - STD TI - Cummings SM, McMullan M, Joyce DA, van Oosterhout C. Solutions for PCR, cloning and sequencing errors in population genetic analysis. Conserv. Genetics. 2010;11:1095–7. ID - ref8 ER - TY - JOUR AU - Burri, R. AU - Promerová, M. AU - Goebel, J. AU - Fumagalli, L. PY - 2014 DA - 2014// TI - PCR-based isolation of multigene families: lessons from the avian MHC class IIB JO - Mol Ecol VL - 14 UR - https://doi.org/10.1111/1755-0998.12234 DO - 10.1111/1755-0998.12234 ID - Burri2014 ER - TY - JOUR AU - Lenz, T. L. AU - Becker, S. PY - 2008 DA - 2008// TI - Simple approach to reduce PCR artefact formation leads to reliable genotyping of MHC and other highly polymorphic loci - implications for evolutionary analysis JO - Gene VL - 427 UR - https://doi.org/10.1016/j.gene.2008.09.013 DO - 10.1016/j.gene.2008.09.013 ID - Lenz2008 ER - TY - JOUR AU - Babik, W. PY - 2010 DA - 2010// TI - Methods for MHC genotyping in non-model vertebrates JO - Mol Ecol VL - 10 UR - https://doi.org/10.1111/j.1755-0998.2009.02788.x DO - 10.1111/j.1755-0998.2009.02788.x ID - Babik2010 ER - TY - JOUR AU - Lighten, J. AU - Oosterhout, C. AU - Bentzen, P. PY - 2014 DA - 2014// TI - Critical review of NGS analyses for de novo genotyping multigene families JO - Mol Ecol VL - 23 UR - https://doi.org/10.1111/mec.12843 DO - 10.1111/mec.12843 ID - Lighten2014 ER - TY - JOUR AU - Sommer, S. PY - 2005 DA - 2005// TI - The importance of immune gene variability (MHC) in evolutionary ecology and conservation JO - Front Zool VL - 18 UR - https://doi.org/10.1186/1742-9994-2-1 DO - 10.1186/1742-9994-2-1 ID - Sommer2005 ER - TY - JOUR AU - Eizaguirre, C. AU - Lenz, T. L. AU - Traulsen, A. AU - Milinski, M. PY - 2009 DA - 2009// TI - Speciation accelerated and stabilized by pleiotropic major histocompatibility complex immunogenes JO - Ecol Lett VL - 12 UR - https://doi.org/10.1111/j.1461-0248.2008.01247.x DO - 10.1111/j.1461-0248.2008.01247.x ID - Eizaguirre2009 ER - TY - STD TI - Trowsdale J. The MHC, disease and selection. Immunol. Lett.. Elsevier B.V.; 2011;137:1–8. ID - ref15 ER - TY - JOUR AU - Klein, J. AU - Sato, A. AU - Nikolaidis, N. PY - 2007 DA - 2007// TI - MHC, TSP, and the origin of species: from immunogenetics to evolutionary genetics JO - Annu Rev Genet VL - 41 UR - https://doi.org/10.1146/annurev.genet.41.110306.130137 DO - 10.1146/annurev.genet.41.110306.130137 ID - Klein2007 ER - TY - JOUR AU - Sepil, I. AU - Lachish, S. AU - Hinks, A. E. AU - Sheldon, B. C. PY - 2013 DA - 2013// TI - Mhc supertypes confer both qualitative and quantitative resistance to avian malaria infections in a wild bird population JO - Proc R Soc B Biol Sci VL - 280 UR - https://doi.org/10.1098/rspb.2013.0134 DO - 10.1098/rspb.2013.0134 ID - Sepil2013 ER - TY - JOUR AU - Vincek, V. AU - O’Huigin, C. AU - Satta, Y. AU - Takahata, N. AU - Boag, P. T. AU - Grant, P. R. PY - 1997 DA - 1997// TI - How large was the founding population of Darwin’s finches? JO - Proc R Soc London, Ser B VL - 264 UR - https://doi.org/10.1098/rspb.1997.0017 DO - 10.1098/rspb.1997.0017 ID - Vincek1997 ER - TY - JOUR AU - Kocher, T. D. PY - 2004 DA - 2004// TI - Adaptive evolution and explosive speciation: the cichlid fish model JO - Nat Rev Genet VL - 5 UR - https://doi.org/10.1038/nrg1316 DO - 10.1038/nrg1316 ID - Kocher2004 ER - TY - JOUR AU - Seehausen, O. PY - 2006 DA - 2006// TI - African cichlid fish: a model system in adaptive radiation research JO - Proc R Soc B VL - 273 UR - https://doi.org/10.1098/rspb.2006.3539 DO - 10.1098/rspb.2006.3539 ID - Seehausen2006 ER - TY - JOUR AU - Turner, G. F. PY - 2007 DA - 2007// TI - Adaptive radiation of cichlid fish JO - Curr Biol VL - 17 UR - https://doi.org/10.1016/j.cub.2007.07.026 DO - 10.1016/j.cub.2007.07.026 ID - Turner2007 ER - TY - JOUR AU - Salzburger, W. PY - 2009 DA - 2009// TI - The interaction of sexually and naturally selected traits in the adaptive radiations of cichlid fishes JO - Mol Ecol VL - 18 UR - https://doi.org/10.1111/j.1365-294X.2008.03981.x DO - 10.1111/j.1365-294X.2008.03981.x ID - Salzburger2009 ER - TY - STD TI - Kullander SO. Cichlidae. Pp. 605-654. In: Reis RE,Kullander SO, Ferraris Jr CJ, editors. Check list of the freshwater fishes of South and Central America. Porto Alegre: Edipucrs; 2003. p. 729. ID - ref23 ER - TY - JOUR AU - Barlow, G. W. AU - Munsey, J. W. PY - 1976 DA - 1976// TI - The red devil-Midas-arrow cichlid species complex in Nicaragua JO - Pap Biol Sci VL - 1 ID - Barlow1976 ER - TY - JOUR AU - Elmer, K. R. AU - Lehtonen, T. K. AU - Kautt, A. F. AU - Harrod, C. AU - Meyer, A. PY - 2010 DA - 2010// TI - Rapid sympatric ecological differentiation of crater lake cichlid fishes within historic times JO - BMC Biol VL - 8 UR - https://doi.org/10.1186/1741-7007-8-60 DO - 10.1186/1741-7007-8-60 ID - Elmer2010 ER - TY - JOUR AU - Gavrilets, S. AU - Vose, A. AU - Barluenga, M. AU - Salzburger, W. AU - Meyer, A. PY - 2007 DA - 2007// TI - Case studies and mathematical models of ecological speciation. 1. Cichlids in a crater lake. Mol JO - Ecol VL - 16 ID - Gavrilets2007 ER - TY - JOUR AU - Barluenga, M. AU - Meyer, A. PY - 2004 DA - 2004// TI - The Midas cichlid species complex: incipient sympatric speciation in Nicaraguan cichlid fishes? JO - Mol Ecol VL - 13 UR - https://doi.org/10.1111/j.1365-294X.2004.02211.x DO - 10.1111/j.1365-294X.2004.02211.x ID - Barluenga2004 ER - TY - JOUR AU - Barluenga, M. AU - Stölting, K. N. AU - Salzburger, W. AU - Muschick, M. AU - Meyer, A. PY - 2006 DA - 2006// TI - Sympatric speciation in Nicaraguan crater lake cichlid fish JO - Nature VL - 439 UR - https://doi.org/10.1038/nature04325 DO - 10.1038/nature04325 ID - Barluenga2006 ER - TY - JOUR AU - Barluenga, M. AU - Meyer, A. PY - 2010 DA - 2010// TI - Phylogeography, colonization and population history of the Midas cichlid species complex (Amphilophus spp.) in the Nicaraguan crater lakes JO - BMC Evol Biol VL - 10 UR - https://doi.org/10.1186/1471-2148-10-326 DO - 10.1186/1471-2148-10-326 ID - Barluenga2010 ER - TY - JOUR AU - Muschick, M. AU - Barluenga, M. AU - Salzburger, W. AU - Meyer, A. PY - 2011 DA - 2011// TI - Adaptive phenotypic plasticity in the Midas cichlid fish pharyngeal jaw and its relevance in adaptive radiation JO - BMC Evol Biol VL - 11 UR - https://doi.org/10.1186/1471-2148-11-116 DO - 10.1186/1471-2148-11-116 ID - Muschick2011 ER - TY - JOUR AU - Thibert-Plante, X. AU - Gavrilets, S. PY - 2013 DA - 2013// TI - Evolution of mate choice and the so-called magic traits in ecological speciation JO - Ecol Lett VL - 16 UR - https://doi.org/10.1111/ele.12131 DO - 10.1111/ele.12131 ID - Thibert-Plante2013 ER - TY - JOUR AU - Kornfield, I. AU - Smith, P. F. PY - 2000 DA - 2000// TI - African Cichlid Fish: Model Systems for Evolutionary Biology JO - Annu Rev Ecol Syst VL - 31 UR - https://doi.org/10.1146/annurev.ecolsys.31.1.163 DO - 10.1146/annurev.ecolsys.31.1.163 ID - Kornfield2000 ER - TY - JOUR AU - Elmer, K. R. AU - Fan, S. AU - Gunter, H. M. AU - Jones, J. C. AU - Boekhoff, S. AU - Kuraku, S. PY - 2010 DA - 2010// TI - Rapid evolution and selection inferred from the transcriptomes of sympatric crater lake cichlid fishes JO - Mol Ecol VL - 19 UR - https://doi.org/10.1111/j.1365-294X.2009.04488.x DO - 10.1111/j.1365-294X.2009.04488.x ID - Elmer2010 ER - TY - JOUR AU - Kautt, A. F. AU - Elmer, K. R. AU - Meyer, A. PY - 2012 DA - 2012// TI - Genomic signatures of divergent selection and speciation patterns in a “natural experiment”, the young parallel radiations of Nicaraguan crater lake cichlid fishes JO - Mol Ecol VL - 21 UR - https://doi.org/10.1111/j.1365-294X.2012.05738.x DO - 10.1111/j.1365-294X.2012.05738.x ID - Kautt2012 ER - TY - JOUR AU - Santos, E. M. AU - Braasch, I. AU - Boileau, N. AU - Meyer, B. S. AU - Sauteur, L. AU - Böhne, A. PY - 2014 DA - 2014// TI - The evolution of cichlid fish egg-spots is linked with a cis-regulatory change JO - Nat Commun VL - 5 UR - https://doi.org/10.1038/ncomms6149 DO - 10.1038/ncomms6149 ID - Santos2014 ER - TY - JOUR AU - Summers, K. AU - McKeon, S. AU - Sellars, J. AU - Keusenkothen, M. AU - Morris, J. AU - Gloeckner, D. PY - 2003 DA - 2003// TI - Parasitic exploitation as an engine of diversity JO - Biol Rev Camb Philos Soc VL - 78 UR - https://doi.org/10.1017/S146479310300616X DO - 10.1017/S146479310300616X ID - Summers2003 ER - TY - JOUR AU - Blais, J. AU - Rico, C. AU - Oosterhout, C. AU - Cable, J. AU - Turner, G. F. AU - Bernatchez, L. PY - 2007 DA - 2007// TI - MHC adaptive divergence between closely related and sympatric African cichlids JO - PLoS One VL - 2 UR - https://doi.org/10.1371/journal.pone.0000734 DO - 10.1371/journal.pone.0000734 ID - Blais2007 ER - TY - STD TI - Klein J. Generation of diversity at MHC loci: Implications for T-cell receptor repertoires. In: Fougereau M, Dausset J, editors. Immunol. 1980;80: 239–53. ID - ref38 ER - TY - JOUR AU - Lenz, T. L. AU - Eizaguirre, C. AU - Kalbe, M. AU - Milinski, M. PY - 2013 DA - 2013// TI - Evaluating patterns of convergent evolution and trans-species polymorphism at MHC immunogenes in two sympatric stickleback species JO - Evolution VL - 67 UR - https://doi.org/10.1111/evo.12124 DO - 10.1111/evo.12124 ID - Lenz2013 ER - TY - JOUR AU - Xu, S. AU - Chen, B. AU - Zhou, K. AU - Yang, G. PY - 2008 DA - 2008// TI - High similarity at three MHC loci between the baiji and finless porpoise: trans-species or convergent evolution? JO - Mol Phylogenet Evol VL - 47 UR - https://doi.org/10.1016/j.ympev.2007.05.026 DO - 10.1016/j.ympev.2007.05.026 ID - Xu2008 ER - TY - JOUR AU - Klein, J. AU - Sato, A. AU - Nagl, S. AU - O’hUigin, C. PY - 1998 DA - 1998// TI - Molecular trans-species polymorphism JO - Annu Rev Ecol Syst VL - 29 UR - https://doi.org/10.1146/annurev.ecolsys.29.1.1 DO - 10.1146/annurev.ecolsys.29.1.1 ID - Klein1998 ER - TY - JOUR AU - Stiebens, V. V. A. AU - Merino, S. E. AU - Chain, F. J. J. AU - Eizaguirre, C. PY - 2013 DA - 2013// TI - Evolution of immunogenes in the endangered loggerhead sea turtle (Caretta caretta) revealed by 454 amplicon sequencing JO - BMC Evol Biol VL - 13 UR - https://doi.org/10.1186/1471-2148-13-95 DO - 10.1186/1471-2148-13-95 ID - Stiebens2013 ER - TY - JOUR AU - Bryja, J. AU - Galan, M. AU - Charbonnel, N. AU - Cosson, J. F. PY - 2006 DA - 2006// TI - Duplication, balancing selection and trans-species evolution explain the high levels of polymorphism of the DQA MHC class II gene in voles (Arvicolinae) JO - Immunogenetics VL - 58 UR - https://doi.org/10.1007/s00251-006-0085-6 DO - 10.1007/s00251-006-0085-6 ID - Bryja2006 ER - TY - JOUR AU - Kiemnec-Tyburczy, K. M. AU - Richmond, J. Q. AU - Savage, A. E. AU - Zamudio, K. R. PY - 2010 DA - 2010// TI - Selection, trans-species polymorphism, and locus identification of major histocompatibility complex class IIβ alleles of New World ranid frogs JO - Immunogenetics VL - 62 UR - https://doi.org/10.1007/s00251-010-0476-6 DO - 10.1007/s00251-010-0476-6 ID - Kiemnec-Tyburczy2010 ER - TY - JOUR AU - Eimes, J. A. AU - Townsend, A. K. AU - Sepil, I. AU - Nishiumi, I. AU - Satta, Y. PY - 2015 DA - 2015// TI - Patterns of evolution of MHC class II genes of crows (Corvus) suggest trans-species polymorphism JO - PeerJ VL - 3 UR - https://doi.org/10.7717/peerj.853 DO - 10.7717/peerj.853 ID - Eimes2015 ER - TY - JOUR AU - Kikkawa, E. F. AU - Tsuda, T. T. AU - Sumiyama, D. AU - Naruse, T. K. AU - Fukuda, M. AU - Kurita, M. PY - 2009 DA - 2009// TI - Trans-species polymorphism of the Mhc class II DRB-like gene in banded penguins (genus Spheniscus) JO - Immunogenetics VL - 61 UR - https://doi.org/10.1007/s00251-009-0363-1 DO - 10.1007/s00251-009-0363-1 ID - Kikkawa2009 ER - TY - JOUR AU - Ottová, E. AU - Simková, A. AU - Martin, J. -. F. AU - Bellocq, J. G. AU - Gelnar, M. AU - Allienne, J. -. F. PY - 2005 DA - 2005// TI - Evolution and trans-species polymorphism of MHC class IIbeta genes in cyprinid fish JO - Fish Shellfish Immunol VL - 18 UR - https://doi.org/10.1016/j.fsi.2004.07.004 DO - 10.1016/j.fsi.2004.07.004 ID - Ottová2005 ER - TY - JOUR AU - Klein, D. AU - Ono, H. AU - O’hUigin, C. AU - Vincek, V. AU - Goldschids, T. AU - Klein, J. PY - 1993 DA - 1993// TI - Extensive MHC variability in cichlids of Lake Malawi JO - Nature VL - 364 UR - https://doi.org/10.1038/364330a0 DO - 10.1038/364330a0 ID - Klein1993 ER - TY - JOUR AU - Murray, B. W. AU - Shintani, S. AU - Sültmann, H. AU - Klein, J. PY - 2000 DA - 2000// TI - Major histocompatibility complex class II A genes in cichlid fishes: identification, expression, linkage relationships, and haplotype variation JO - Immunogenetics VL - 51 UR - https://doi.org/10.1007/s002510000177 DO - 10.1007/s002510000177 ID - Murray2000 ER - TY - JOUR AU - Figueroa, F. AU - Mayer, W. E. AU - Sültmann, H. AU - O’hUigin, C. AU - Tichy, H. AU - Satta, Y. PY - 2000 DA - 2000// TI - Mhc class II B gene evolution in East African cichlid fishes JO - Immunogenetics VL - 51 UR - https://doi.org/10.1007/s002510000181 DO - 10.1007/s002510000181 ID - Figueroa2000 ER - TY - JOUR AU - Málaga-Trillo, E. AU - Zaleska-Rutczynska, Z. AU - McAndrew, B. AU - Vincek, V. AU - Figueroa, F. AU - Sültmann, H. PY - 1998 DA - 1998// TI - Linkage relationships and haplotype polymorphism among cichlid Mhc class II B loci JO - Genetics VL - 149 ID - Málaga-Trillo1998 ER - TY - JOUR AU - Sato, A. AU - Klein, D. AU - Sültmann, H. AU - Figueroa, F. AU - O’hUigin, C. AU - Klein, J. PY - 1997 DA - 1997// TI - Class I mhc genes of cichlid fishes: identification, expression, and polymorphism JO - Immunogenetics VL - 46 UR - https://doi.org/10.1007/s002510050243 DO - 10.1007/s002510050243 ID - Sato1997 ER - TY - JOUR AU - Ono, H. AU - O’hUigin, C. AU - Tichy, H. AU - Klein, J. PY - 1993 DA - 1993// TI - Major-histocompatibility-complex variation in two species of cichlid fishes from Lake Malawi JO - Mol Biol Evol VL - 10 ID - Ono1993 ER - TY - BOOK AU - Albert, J. S. AU - Reis, R. E. PY - 2011 DA - 2011// TI - Historical Biogeography of Neotropical Freshwater Fishes. Albert JS, Reis RE, editors PB - University of California Press CY - Berkeley Los Angeles London UR - https://doi.org/10.1525/california/9780520268685.001.0001 DO - 10.1525/california/9780520268685.001.0001 ID - Albert2011 ER - TY - JOUR AU - Friedman, M. AU - Keck, B. P. AU - Dornburg, A. AU - Eytan, R. I. AU - Martin, C. H. AU - Hulsey, C. D. PY - 2013 DA - 2013// TI - Molecular and fossil evidence place the origin of cichlid fishes long after Gondwanan rifting JO - Proc R Soc London, Ser B VL - 280 UR - https://doi.org/10.1098/rspb.2013.1733 DO - 10.1098/rspb.2013.1733 ID - Friedman2013 ER - TY - STD TI - Matschiner M, Musilová Z, Barth JMI, Starostová Z, Salzburger W, Steel M, et al. Bayesian Phylogenetic Estimation of Clade Ages Supports Trans-Atlantic Dispersal of Cichlid Fishes. Syst Biol. 2016. syw076. doi:10.1093/sysbio/syw076. ID - ref56 ER - TY - JOUR AU - Sato, A. AU - Figueroa, F. AU - O’hUigin, C. AU - Steck, N. AU - Klein, J. PY - 1998 DA - 1998// TI - Cloning of major histocompatibility complex (Mhc) genes from threespine stickleback, Gasterosteus aculeatus JO - Mol Mar Biol Biotechnol VL - 7 ID - Sato1998 ER - TY - JOUR AU - Lenz, T. L. AU - Eizaguirre, C. AU - Becker, S. AU - Reusch, T. B. H. PY - 2009 DA - 2009// TI - RSCA genotyping of MHC for high-throughput evolutionary studies in the model organism three-spined stickleback Gasterosteus aculeatus JO - BMC Evol Biol VL - 9 UR - https://doi.org/10.1186/1471-2148-9-57 DO - 10.1186/1471-2148-9-57 ID - Lenz2009 ER - TY - JOUR AU - Bracamonte, S. E. AU - Baltazar-Soares, M. AU - Eizaguirre, C. PY - 2015 DA - 2015// TI - Characterization of MHC class II genes in the critically endangered European eel (Anguilla Anguilla) JO - Conserv Genet Resour VL - 7 UR - https://doi.org/10.1007/s12686-015-0501-z DO - 10.1007/s12686-015-0501-z ID - Bracamonte2015 ER - TY - STD TI - Hall T. BioEdit: a user-friendly biological sequence alignment editor and 975 analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser. 1999;41:95–8. ID - ref60 ER - TY - JOUR AU - Klein, J. AU - Bontrop, R. E. AU - Dawkins, R. L. AU - Erlich, H. A. AU - Gyllensten, U. B. AU - Heise, E. R. PY - 1990 DA - 1990// TI - Nomenclature for the major histocompatibility complex of different species: a proposal JO - Immunogenetics VL - 31 ID - Klein1990 ER - TY - JOUR AU - Benson, G. PY - 1999 DA - 1999// TI - Tandem repeats finder: A program to analyze DNA sequences JO - Nucleic Acids Res VL - 27 UR - https://doi.org/10.1093/nar/27.2.573 DO - 10.1093/nar/27.2.573 ID - Benson1999 ER - TY - JOUR AU - Elmer, K. R. AU - Fan, S. AU - Kusche, H. AU - Luise Spreitzer, M. AU - Kautt, A. F. AU - Franchini, P. PY - 2014 DA - 2014// TI - Parallel evolution of Nicaraguan crater lake cichlid fishes via non-parallel routes JO - Nat Commun VL - 5 UR - https://doi.org/10.1038/ncomms6168 DO - 10.1038/ncomms6168 ID - Elmer2014 ER - TY - JOUR AU - Tamura, K. AU - Nei, M. AU - Kumar, S. PY - 2004 DA - 2004// TI - Prospects for inferring very large phylogenies by using the neighbor-joining method JO - Proc Natl Acad Sci U S A VL - 101 UR - https://doi.org/10.1073/pnas.0404206101 DO - 10.1073/pnas.0404206101 ID - Tamura2004 ER - TY - JOUR AU - Tamura, K. AU - Peterson, D. AU - Peterson, N. AU - Stecher, G. AU - Nei, M. AU - Kumar, S. PY - 2011 DA - 2011// TI - MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods JO - Mol Biol Evol VL - 28 UR - https://doi.org/10.1093/molbev/msr121 DO - 10.1093/molbev/msr121 ID - Tamura2011 ER - TY - BOOK AU - Bunn, A. AU - Korpela, M. PY - 2016 DA - 2016// TI - Time Series Analysis in dplR ID - Bunn2016 ER - TY - JOUR AU - Bouckaert, R. AU - Heled, J. AU - Kühnert, D. AU - Vaughan, T. AU - Wu, C. H. AU - Xie, D. PY - 2014 DA - 2014// TI - BEAST 2: A Software Platform for Bayesian Evolutionary Analysis JO - PLoS Comput Biol VL - 10 UR - https://doi.org/10.1371/journal.pcbi.1003537 DO - 10.1371/journal.pcbi.1003537 ID - Bouckaert2014 ER - TY - JOUR AU - Lanfear, R. AU - Calcott, B. AU - Kainer, D. AU - Mayer, C. AU - Stamatakis, A. PY - 2014 DA - 2014// TI - Selecting optimal partitioning schemes for phylogenomic datasets JO - BMC Evol Biol VL - 14 UR - https://doi.org/10.1186/1471-2148-14-82 DO - 10.1186/1471-2148-14-82 ID - Lanfear2014 ER - TY - JOUR AU - Huson, D. H. AU - Bryant, D. PY - 2006 DA - 2006// TI - Application of phylogenetic networks in evolutionary studies JO - Mol Biol Evol VL - 23 UR - https://doi.org/10.1093/molbev/msj030 DO - 10.1093/molbev/msj030 ID - Huson2006 ER - TY - JOUR AU - Sato, A. AU - Dongak, R. AU - Hao, L. AU - Shintani, S. PY - 2012 DA - 2012// TI - Organization of Mhc class II A and B genes in the tilapiine fish Oreochromis JO - Immunogenetics VL - 64 UR - https://doi.org/10.1007/s00251-012-0618-0 DO - 10.1007/s00251-012-0618-0 ID - Sato2012 ER - TY - JOUR AU - Yang, Z. PY - 2007 DA - 2007// TI - PAML 4: phylogenetic analysis by maximum likelihood JO - Mol Biol Evol VL - 24 UR - https://doi.org/10.1093/molbev/msm088 DO - 10.1093/molbev/msm088 ID - Yang2007 ER - TY - JOUR AU - Arnold, K. AU - Bordoli, L. AU - Kopp, J. AU - Schwede, T. PY - 2006 DA - 2006// TI - The SWISS-MODEL workspace: A web-based environment for protein structure homology modelling JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/bti770 DO - 10.1093/bioinformatics/bti770 ID - Arnold2006 ER - TY - JOUR AU - Haase, D. AU - Roth, O. AU - Kalbe, M. AU - Schmiedeskamp, G. AU - Scharsack, J. P. AU - Rosenstiel, P. PY - 2013 DA - 2013// TI - Absence of major histocompatibility complex class II mediated immunity in pipefish, Syngnathus typhle: evidence from deep transcriptome sequencing JO - Biol Lett VL - 9 UR - https://doi.org/10.1098/rsbl.2013.0044 DO - 10.1098/rsbl.2013.0044 ID - Haase2013 ER - TY - JOUR AU - Star, B. AU - Nederbragt, A. J. AU - Jentoft, S. AU - Grimholt, U. AU - Malmstrøm, M. AU - Gregers, T. F. PY - 2011 DA - 2011// TI - The genome sequence of Atlantic cod reveals a unique immune system JO - Nature VL - 477 UR - https://doi.org/10.1038/nature10342 DO - 10.1038/nature10342 ID - Star2011 ER - TY - JOUR AU - Star, B. AU - Jentoft, S. PY - 2012 DA - 2012// TI - Why does the immune system of Atlantic cod lack MHC II? JO - BioEssays VL - 34 UR - https://doi.org/10.1002/bies.201200005 DO - 10.1002/bies.201200005 ID - Star2012 ER - TY - JOUR AU - Bahr, A. AU - Wilson, A. B. PY - 2011 DA - 2011// TI - The impact of sex-role reversal on the diversity of the major histocompatibility complex: insights from the seahorse (Hippocampus abdominalis) JO - BMC Evol Biol VL - 11 UR - https://doi.org/10.1186/1471-2148-11-121 DO - 10.1186/1471-2148-11-121 ID - Bahr2011 ER - TY - JOUR AU - Xu, T. AU - Chen, S. AU - Zhang, Y. X. PY - 2010 DA - 2010// TI - MHC class II alpha gene polymorphism and its association with resistance/susceptibility to Vibrio anguillarum in Japanese flounder (Paralichthys olivaceus) JO - Dev Comp Immunol VL - 34 UR - https://doi.org/10.1016/j.dci.2010.05.008 DO - 10.1016/j.dci.2010.05.008 ID - Xu2010 ER - TY - JOUR AU - Li, H. AU - Jiang, L. AU - Han, J. AU - Su, H. AU - Yang, Q. AU - He, C. PY - 2011 DA - 2011// TI - Major histocompatibility complex class IIA and IIB genes of the spotted halibut Verasper variegatus: Genomic structure, molecular polymorphism, and expression analysis JO - Fish Physiol Biochem VL - 37 UR - https://doi.org/10.1007/s10695-011-9476-1 DO - 10.1007/s10695-011-9476-1 ID - Li2011 ER - TY - JOUR AU - Lighten, J. AU - Oosterhout, C. AU - Paterson, I. G. AU - McMullan, M. AU - Bentzen, P. AU - Oosterhout, C. PY - 2014 DA - 2014// TI - Ultra-deep Illumina sequencing accurately identifies MHC class IIb alleles and provides evidence for copy number variation in the guppy (Poecilia reticulata) JO - Mol Ecol VL - 14 UR - https://doi.org/10.1111/1755-0998.12225 DO - 10.1111/1755-0998.12225 ID - Lighten2014 ER - TY - JOUR AU - Lenz, T. L. AU - Eizaguirre, C. AU - Scharsack, J. P. AU - Kalbe, M. AU - Milinski, M. PY - 2009 DA - 2009// TI - Disentangling the role of MHC-dependent “good genes” and “compatible genes” in mate-choice decisions of three-spined sticklebacks Gasterosteus aculeatus under semi-natural conditions JO - J Fish Biol VL - 75 UR - https://doi.org/10.1111/j.1095-8649.2009.02410.x DO - 10.1111/j.1095-8649.2009.02410.x ID - Lenz2009 ER - TY - JOUR AU - Spurgin, L. G. AU - Richardson, D. S. PY - 2010 DA - 2010// TI - How pathogens drive genetic diversity: MHC, mechanisms and misunderstandings JO - Proc R Soc B Biol Sci VL - 277 UR - https://doi.org/10.1098/rspb.2009.2084 DO - 10.1098/rspb.2009.2084 ID - Spurgin2010 ER - TY - JOUR AU - Milinski, M. PY - 2014 DA - 2014// TI - Arms races, ornaments and fragrant genes: The dilemma of mate choice in fishes JO - Neurosci Biobehav Rev VL - 46 UR - https://doi.org/10.1016/j.neubiorev.2014.08.005 DO - 10.1016/j.neubiorev.2014.08.005 ID - Milinski2014 ER - TY - JOUR AU - Eizaguirre, C. AU - Lenz, T. L. AU - Kalbe, M. AU - Milinski, M. PY - 2012 DA - 2012// TI - Divergent selection on locally adapted major histocompatibility complex immune genes experimentally proven in the field JO - Ecol Lett VL - 15 UR - https://doi.org/10.1111/j.1461-0248.2012.01791.x DO - 10.1111/j.1461-0248.2012.01791.x ID - Eizaguirre2012 ER - TY - JOUR AU - Wegner, K. M. PY - 2009 DA - 2009// TI - Massive parallel MHC genotyping: titanium that shines JO - Mol Ecol VL - 18 UR - https://doi.org/10.1111/j.1365-294X.2009.04173.x DO - 10.1111/j.1365-294X.2009.04173.x ID - Wegner2009 ER - TY - JOUR AU - Pang, J. AU - Gao, F. AU - Lu, M. AU - Ye, X. AU - Zhu, H. AU - Ke, X. PY - 2013 DA - 2013// TI - Major histocompatibility complex class IIA and IIB genes of Nile tilapia Oreochromis niloticus: genomic structure, molecular polymorphism and expression patterns JO - Fish Shellfish Immunol VL - 34 UR - https://doi.org/10.1016/j.fsi.2012.11.048 DO - 10.1016/j.fsi.2012.11.048 ID - Pang2013 ER - TY - JOUR AU - Chen, S. L. AU - Zhang, Y. X. AU - Xu, M. Y. AU - Ji, X. S. AU - Yu, G. C. AU - Dong, C. F. PY - 2006 DA - 2006// TI - Molecular polymorphism and expression analysis of MHC class II B gene from red sea bream (Chrysophrys major) JO - Dev Comp Immunol VL - 30 UR - https://doi.org/10.1016/j.dci.2005.06.001 DO - 10.1016/j.dci.2005.06.001 ID - Chen2006 ER - TY - JOUR AU - Zhang, Y. X. AU - Chen, S. L. AU - Liu, Y. G. AU - Sha, Z. X. AU - Liu, Z. J. PY - 2006 DA - 2006// TI - Major histocompatibility complex class IIB allele polymorphism and its association with resistance/susceptibility to Vibrio anguillarum in Japanese flounder (Paralichthys olivaceus) JO - Mar Biotechnol VL - 8 UR - https://doi.org/10.1007/s10126-005-6185-8 DO - 10.1007/s10126-005-6185-8 ID - Zhang2006 ER - TY - JOUR AU - Dijkstra, J. M. AU - Katagiri, T. AU - Hosomichi, K. AU - Yanagiya, K. AU - Inoko, H. AU - Ototake, M. PY - 2007 DA - 2007// TI - A third broad lineage of major histocompatibility complex (MHC) class I in teleost fish; MHC class II linkage and processed genes JO - Immunogenetics VL - 59 UR - https://doi.org/10.1007/s00251-007-0198-6 DO - 10.1007/s00251-007-0198-6 ID - Dijkstra2007 ER - TY - JOUR AU - Figueroa, F. AU - Ono, H. AU - Tichy, H. AU - O’Huigin, C. AU - Klein, J. PY - 1995 DA - 1995// TI - Evidence for Insertion of a New Intron into an Mhc Gene of Perch-Like Fish JO - Proc R Soc B Biol Sci VL - 259 UR - https://doi.org/10.1098/rspb.1995.0048 DO - 10.1098/rspb.1995.0048 ID - Figueroa1995 ER - TY - STD TI - Xu T, Sun Y, Shi G, Cheng Y, Wang R. Characterization of the Major Histocompatibility Complex Class II Genes in Miiuy Croaker. Liu Z, editor. PLoS One. 2011;6:e23823. ID - ref90 ER - TY - JOUR AU - Jiang, J. AU - Li, C. AU - Zhang, Q. AU - Wang, X. PY - 2015 DA - 2015// TI - Locus number estimation of MHC class II B in stone flounder and Japanese flounder JO - Int J Mol Sci VL - 16 UR - https://doi.org/10.3390/ijms16036000 DO - 10.3390/ijms16036000 ID - Jiang2015 ER - TY - JOUR AU - Grimholt, U. PY - 2016 DA - 2016// TI - MHC and Evolution in Teleosts JO - Bilology VL - 5 ID - Grimholt2016 ER - TY - JOUR AU - Kropshofer, H. AU - Hämmerling, G. J. AU - Vogt, A. B. PY - 1999 DA - 1999// TI - The impact of the non-classical MHC proteins HLA-DM and HLA-DO on loading of MHC class II molecules JO - Immunol Rev VL - 172 UR - https://doi.org/10.1111/j.1600-065X.1999.tb01371.x DO - 10.1111/j.1600-065X.1999.tb01371.x ID - Kropshofer1999 ER - TY - JOUR AU - Harstad, H. AU - Lukacs, M. F. AU - Bakke, H. G. AU - Grimholt, U. PY - 2008 DA - 2008// TI - Multiple expressed MHC class II loci in salmonids; details of one non-classical region in Atlantic salmon (Salmo salar) JO - BMC Genomics VL - 9 UR - https://doi.org/10.1186/1471-2164-9-193 DO - 10.1186/1471-2164-9-193 ID - Harstad2008 ER - TY - JOUR AU - Xu, T. AU - Liu, J. AU - Sun, Y. AU - Zhu, Z. AU - Liu, T. PY - 2016 DA - 2016// TI - Characterization of 40 full-length MHC class IIA functional alleles in miiuy croaker: Polymorphism and positive selection JO - Dev Comp Immunol VL - 55 UR - https://doi.org/10.1016/j.dci.2015.10.019 DO - 10.1016/j.dci.2015.10.019 ID - Xu2016 ER - TY - STD TI - Takahata N, Satta Y, Klein J. Polymorphism and balancing selection at major histocompatibility complex. Genetics. 1992;130TSK92:925–38. ID - ref96 ER - TY - JOUR AU - Buckling, A. AU - Rainey, P. B. PY - 2002 DA - 2002// TI - The role of parasites in sympatric and allopatric host diversification JO - Nature VL - 420 UR - https://doi.org/10.1038/nature01164 DO - 10.1038/nature01164 ID - Buckling2002 ER - TY - JOUR AU - Eizaguirre, C. AU - Yeates, S. E. AU - Lenz, T. L. AU - Kalbe, M. AU - Milinski, M. PY - 2009 DA - 2009// TI - MHC-based mate choice combines good genes and maintenance of MHC polymorphism JO - Mol Ecol VL - 18 UR - https://doi.org/10.1111/j.1365-294X.2009.04243.x DO - 10.1111/j.1365-294X.2009.04243.x ID - Eizaguirre2009 ER - TY - JOUR AU - Eizaguirre, C. AU - Lenz, T. L. PY - 2010 DA - 2010// TI - Major histocompatibility complex polymorphism: dynamics and consequences of parasite-mediated local adaptation in fishes JO - J Fish Biol VL - 77 UR - https://doi.org/10.1111/j.1095-8649.2010.02819.x DO - 10.1111/j.1095-8649.2010.02819.x ID - Eizaguirre2010 ER - TY - STD TI - Zhou F, Dong Z, Fu Y, Li T, Zeng Y, Ji X, et al. Molecular cloning, genomic structure, polymorphism and expression analysis of major histocompatibility complex class II B gene of Nile tilapia (Oreochromis niloticus). Aquaculture. 2013;372-375:149–57. ID - ref100 ER - TY - JOUR AU - Lynch, S. AU - Santos, S. G. AU - Campbell, E. C. AU - Nimmo, A. M. S. AU - Botting, C. AU - Prescott, A. PY - 2009 DA - 2009// TI - Novel MHC class I structures on exosomes JO - J Immunol VL - 183 UR - https://doi.org/10.4049/jimmunol.0900798 DO - 10.4049/jimmunol.0900798 ID - Lynch2009 ER - TY - JOUR AU - Laurens, V. AU - Chapusot, C. AU - Rosario, O. M. AU - Bentrari, F. AU - Padros, M. R. AU - Tournefier, A. PY - 2001 DA - 2001// TI - Axolotl MHC class II beta chain: predominance of one allele and alternative splicing of the beta1 domain JO - Eur J Immunol VL - 31 UR - https://doi.org/3.0.CO;2-P DO - 3.0.CO;2-P ID - Laurens2001 ER - TY - JOUR AU - Bulut, Z. AU - McCormick, C. R. AU - Bos, D. H. AU - DeWoody, A. J. PY - 2008 DA - 2008// TI - Polymorphism of alternative splicing of major histocompatibility complex transcripts in wild tiger salamanders JO - J Mol Evol VL - 67 UR - https://doi.org/10.1007/s00239-008-9125-1 DO - 10.1007/s00239-008-9125-1 ID - Bulut2008 ER -