Skip to main content

Table 1 SNPs associated with dorsal colour morphs for each pairwise comparison and obtained through Single-SNP association tests using Bayesian regression approach

From: Assessing genotype-phenotype associations in three dorsal colour morphs in the meadow spittlebug Philaenus spumarius (L.) (Hemiptera: Aphrophoridae) using genomic and transcriptomic resources

SNP_ID

Minor Allele

Major Allele

BF0.99

β

maf_TRI

maf_MAR

maf_TYP

MAR-TRI

 3950:1

G

A

0.432

−0.1198

0.1667

0.7727

0.3750

  3950:10

T

A

0.337

−0.1099

0.1667

0.7273

0.3125

  22795:88

G

A

0.457

−0.1246

0.0500

0.5000

0.4286

 40633:18

A

G

0.365

0.1159

0.4500

0.0000

0.0714

 41239:75

G

T

0.373

0.1170

0.3333

0.0000

0.1000

  43069:10

C

G

0.492

−0.1305

0.0000

0.4167

0.5714

  43069:34

A

T

0.492

−0.1305

0.0000

0.4167

0.5000

 50515:83

A

T

0.349

0.1165

0.2857

0.0000

0.0000

 54226:66

A

T

0.418

−0.1245

0.0000

0.3500

0.0000

  55187:79

G

T

0.490

0.1303

0.3889

0.0000

0.5000

 63439:28

C

A

0.403

−0.1203

0.1818

0.6000

0.3889

 63439:8

A

C

0.430

−0.1224

0.1364

0.5500

0.3500

 75897:50

A

G

0.339

0.1158

0.2500

0.0000

0.0000

  75897:7

C

T

0.785

0.1581

0.5833

0.0000

0.0000

 83460:19

C

T

0.376

−0.1173

0.0000

0.3889

0.0000

  87932:85

C

T

0.410

−0.1238

0.0000

0.5000

0.5556

 106126:52

C

T

0.337

0.1161

0.2500

0.0000

0.0000

 124817:20

A

G

0.338

0.1159

0.3500

0.0000

0.0625

 126355:29

T

C

0.579

0.1369

0.5500

0.0455

0.1667

Mean BF0.99 SNPs

   

0.1235

   

Mean all SNPs

   

0.0001

   

MAR-TYP

  3950:10

T

A

0.264

−0.1010

0.1667

0.7273

0.3125

 7095:50

C

T

0.319

0.1123

0.0556

0.0417

0.2000

 11381:9

A

G

0.329

0.1131

0.1667

0.0000

0.2857

 16628:65

C

A

0.502

−0.1287

0.0000

0.5000

0.0000

 20734:39

T

C

0.463

0.1275

0.4286

0.3000

0.7778

 24668:63

C

G

0.369

0.1173

0.3333

0.3182

0.7500

 35205:6

G

C

0.444

0.1255

0.0625

0.2273

0.0000

  45009:87

T

G

0.365

0.1096

0.1500

0.1818

0.6500

 54049:70

G

A

0.424

0.1231

0.5000

0.2727

0.7500

 55187:46

A

G

0.719

0.1555

0.2778

0.0000

0.5000

  55187:79

G

T

0.784

0.1603

0.3889

0.0000

0.5000

 56842:83

A

G

0.265

0.1053

0.2000

0.0455

0.2500

 64204:16

T

G

0.303

−0.1080

0.1250

0.5000

0.1111

 64204:46

G

T

0.296

−0.1072

0.2778

0.5000

0.1111

 64258:61

G

A

0.376

0.1207

0.1500

0.0455

0.4286

 82682:38

T

G

0.258

0.1019

0.4000

0.1111

0.5833

 92187:65

A

C

0.265

−0.1028

0.5000

0.6111

0.1875

 102702:13

T

A

0.314

0.1120

0.0000

0.0000

0.2143

 104139:11

T

A

0.267

−0.1040

0.3500

0.7000

0.3333

Mean BF0.99 SNPs

   

0.1177

   

Mean all SNPs

   

0.0037

   

TRI-TYP

 6535:26

T

C

0.270

−0.1035

0.4444

0.2222

0.0000

 6535:35

G

A

0.270

0.1023

0.1667

0.5556

0.6250

  22795:88

G

A

0.279

0.1075

0.0500

0.5000

0.4286

 24031:66

C

T

0.292

0.1099

0.0000

0.1111

0.2000

 24031:81

T

G

0.370

0.1202

0.0000

0.0556

0.2000

 27816:86

G

A

0.352

−0.1155

0.6364

0.4375

0.1875

 37095:26

T

G

0.313

−0.1110

0.4444

0.1000

0.0556

 41742:86

C

G

0.316

0.113

0.0000

0.4167

0.5714

  43069:10

C

G

0.778

0.1577

0.0000

0.4167

0.5714

  43069:34

A

T

0.717

0.1551

0.0000

0.4167

0.5000

 43143:5

T

C

0.408

−0.1195

0.7222

0.4000

0.2500

  45009:87

T

G

0.429

0.1180

0.1500

0.1818

0.6500

 56752:20

G

A

0.431

−0.1223

0.6875

0.4444

0.1250

 59359:24

G

A

0.447

0.1285

0.1000

0.2000

0.6000

  75897:7

C

T

0.528

−0.1342

0.5833

0.0000

0.0000

  87932:85

C

T

0.355

0.1135

0.0000

0.5000

0.5556

 103746:74

T

A

0.496

0.1342

0.0909

0.4000

0.5833

 118051:49

G

C

0.335

−0.1170

0.1000

0.1500

0.0000

 118835:54

C

A

0.322

−0.1122

0.0455

0.3636

0.0000

 123202:88

T

A

0.330

0.1130

0.0909

0.1000

0.4286

Mean BF0.99 SNPs

   

0.1204

   

Mean all SNPs

   

0.0028

   
  1. Bayes factor values above 0.99 quantile (BF0.99); Effect size of an individual SNP on the phenotype (β); Minor allele frequency for each locus and morph (maf); Mean effect size of BF0.99 SNPs (Mean BF0.99 SNPs); Mean effect size of all 1,837 SNPs. SNPs common to comparisons are underlined