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Table 2 Quantitative trait loci (QTLs) for LEN identified in the Baudin/Awcs276 recombinant inbred line (RIL) population

From: Mapping and validation of major quantitative trait loci for kernel length in wild barley (Hordeum vulgare ssp. spontaneum)

QTLa Chr. Linkage Environment Left Marker Right Marker Range (cM) LOD % Expl.
15LEN-2H 2H LG3 15WJ 3254852|F|0–65:C > A 6270031|F|0–48:C > G-48:C > G 16.326–17.508 3.11 10.4
    Combined 3254852|F|0–65:C > A 6270031|F|0–48:C > G-48:C > G 16.326-17.508 3.35 11.2
LEN-3H 3H LG4 13WJ 6255968 3258624|F|0–41:C > A-41:C > A 23.405–25.611 5.07 29.1
    14WJ 3931871 3258624|F|0–41:C > A-41:C > A 20.731–25.611 7.12 22.3
    Combined 6249147 3258624|F|0–41:C > A-41:C > A 21.375–25.611 6.02 19.2
LEN-4H 4H LG6 14WJ 5249122|F|0–25:G > A-25:G > A 3263178|F|0–25:C > A-25:C > A 68.431–69.947 3.17 10.6
    15WJ 3910814 5249122|F|0–25:G > A-25:G > A 62.983–68.431 5.06 16.4
    Combined 3396110 4007032|F|0–46:C > A-46:C > A 59.535-69.392 5.31 17.2
14LEN-6H 6H LG9 14WJ 4594605|F|0–25:A > G-25:A > G 3259546|F|0–62:A > T-62:A > T 56.031–59.463 5.47 17.6
Combined 4594605|F|0–25:A > G-25:A > G 3259546|F|0–62:A > T-62:A > T 56.031–59.463 3.92 13
14LEN-7H 7H LG11 14WJ 3429688|F|0–38:T > C 3256863|F|0–29:G > A-29:G > A 19.095–22.504 5.31 17.2
  1. Chr chromosome, LG linkage group, cM centimorgan, Combined combined data over the three years of study, % Expl the percentage of variance explained by QTL
  2. aQTLs were identified by Interval Mapping (IM) using MAPQTL6.0, and a test of 1,000 permutations was used to identify the LOD threshold, corresponding to a genome-wide false discovery rate of 5 % (P < 0.05)