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Table 4 KASPar marker results

From: Towards a molecular taxonomic key of the Aurantioideae subfamily using chloroplastic SNP diagnostic markers of the main clades genotyped by competitive allele-specific PCR

Marker

Position

Ref/Alt

Th. Clade

% MD

CDi

PIC

CP_58345

58345

G/A

QQ

2.8 %

1.00

0.11

CP_4296

4296

G/A

QQ

0.9 %

1.00

0.11

CP_32299

32294

G/T

R

4.6 %

1.00

0.28

CP_58401

58401

G/T

S

1.8 %

1.00

0.50

CP_56697

56697

T/C

D

0.0 %

1.00

0.07

CP_3807

3807

C/T

E

1.8 %

1.00

0.09

CP_58454

58454

C/T

G

1.8 %

1.00

0.09

CP_32526

32521

A/G

H

1.8 %

1.00

0.12

CP_3964

3964

C/A

Eremocitrus

1.8 %

1.00

0.02

CP_9149

9149

T/A

LL

0.9 %

1.00

0.02

CP_58062

58062

T/G

X

0.0 %

0.98

0.15

CP_10342

10343

C/A

AA

0.9 %

0.96

0.15

CP_51634

51634

C/A

FF

0.0 %

1.00

0.09

CP_3674

3674

C/G

V

0.0 %

1.00

0.05

CP_4243

4243

A/C

W

0.0 %

1.00

0.10

CP_57691

57691

T/C

RR

0.0 %

1.00

0.04

CP_4159

4159

A/C

CC

0.9 %

0.92

0.36

CP_57064

57064

G/A

F

2.8 %

1.00

0.04

CP_32463

32458

T/C

J

0.0 %

1.00

0.04

CP_9158

9158

T/C

K

0.9 %

1.00

0.09

CP_3829

3829

T/C

M

1.8 %

0.88

0.23

CP_49405

49405

A/G

M

2.8 %

0.98

0.24

CP_3747

3747

G/A

N

0.0 %

0.73

0.12

CP_51068

51068

A/C

OO

0.0 %

1.00

0.02

CP_3982

3982

C/T

P

1.8 %

0.96

0.12

CP_49301

49301

A/G

Q

0.9 %

1.00

0.41

CP_58553

58553

G/T

Q

0.0 %

1.00

0.41

  1. Th. Clade clade differenciated by the SNP according to the in silico analysis, %MD percentage of missing data; Cdi Clade differenciation rate (Gst); PIC polymorphism information content