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Table 2 Species and number of plant accessions/species of the true citrus used for in silico SNP mining and KASPar analysis; classification according to Swingle and Reece [3]

From: Towards a molecular taxonomic key of the Aurantioideae subfamily using chloroplastic SNP diagnostic markers of the main clades genotyped by competitive allele-specific PCR

Genus

Species

In silico SNP mining

KASPar analysis

NS

NA

NS

NA

Citrus

C. maxima

1

1

1

8

 

C. medica

1

1

1

6

 

C. micrantha

1

2

1

2

 

C. reticulata

1

2

1

24

 

C.aurantifolia

1

3

1

3

 

C. aurantium

1

4

1

2

 

C. limon

1

3

1

6

 

C. paradisis

1

2

1

2

 

C. sinensis

1

1

1

2

 

Others

8

12

3

3

Clymenia

Clymenia polyandra

1

1

1

1

Eremocitrus

E. glauca

1

1

1

1

Fortunella

F. hindsii

0

0

1

1

 

F. crassifolia

0

0

1

1

 

F. japonica

1

1

1

1

 

F. margarita

1

1

1

1

 

F. obavata

0

0

1

1

 

F. polyandra

1

1

1

1

Microcitrus

M. australis

1

1

1

1

 

M. australisica

1

1

1

1

 

M. inodora

1

1

1

1

 

M. garrowayae

1

1

1

1

 

M. papuana

1

1

1

1

 

M. virgata

0

0

1

1

 

M. warburgiana

1

1

1

1

 

M. australisica x C. mitis

0

0

1

1

Poncirus

P. trifoliata

1

1

1

2

  1. NS number of species, NA number of accession