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Table 3 The mean ± SD (standard deviation) of STarmir parameters in 11 genotype groups

From: The genetic variants in 3’ untranslated region of voltage-gated sodium channel alpha 1 subunit gene affect the mRNA-microRNA interactions and associate with epilepsy

  LogitProb ΔGhybrid ΔGnucl ΔGtotal site_access Upstream_Access_10nt_nonconserved Dwstream_Access_30nt_nonconserved Upstream_AU_30nt Dwstream_AU_30nt Site_Location Seed_Access Upstream_Access_15nt_conserved Dwstream_Access_10nt_conserved
Wild type 0.632 ± 0.079 −17.378 ± 2.116 −1.866 ± 1.802 −4.143 ± 4.935 0.406 ± 0.117 0.407 ± 0.163 0.426 ± 0.099 0.663 ± 0.116 0.670 ± 0.101 0.457 ± 0.289 0.385 ± 0.169 0.419 ± 0.113 0.382 ± 0.122
CTTTA 0.626 ± 0.079 −17.397 ± 2.129 −1.789 ± 1.774 −3.757 ± 5.011 0.396 ± 0.117 0.411 ± 0.166 0.427 ± 0.103 0.661 ± 0.116 0.669 ± 0.102 0.450 ± 0.288 0.350 ± 0.165 0.462 ± 0.162 0.393 ± 0.142
CTCTA 0.633 ± 0.081 −17.371 ± 2.107 −1.870 ± 1.894 −4.172 ± 5.175 0.408 ± 0.128 0.412 ± 0.175 0.431 ± 0.107 0.660 ± 0.116 0.669 ± 0.102 0.448 ± 0.287 0.369 ± 0.191 0.445 ± 0.148 0.383 ± 0.137
CCTTA 0.625 ± 0.079 −17.409 ± 2.135 −1.829 ± 1.719 −3.815 ± 4.867 0.396 ± 0.110 0.405 ± 0.155 0.422 ± 0.096 0.662 ± 0.116 0.669 ± 0.102 0.458 ± 0.289 0.359 ± 0.165 0.448 ± 0.130 0.387 ± 0.135
TTTTA 0.627 ± 0.079 −17.400 ± 2.124 −1.824 ± 1.790 −3.814 ± 5.027 0.394 ± 0.119 0.408 ± 0.166 0.426 ± 0.107 0.662 ± 0.116 0.669 ± 0.102 0.453 ± 0.289 0.335 ± 0.169 0.458 ± 0.149 0.392 ± 0.131
CTTAACA 0.626 ± 0.078 −17.407 ± 2.135 −1.823 ± 1.711 −3.841 ± 4.851 0.397 ± 0.110 0.406 ± 0.155 0.422 ± 0.096 0.663 ± 0.116 0.669 ± 0.102 0.459 ± 0.290 0.362 ± 0.137 0.446 ± 0.125 0.393 ± 0.122
TTCAACA 0.626 ± 0.080 −17.394 ± 2.126 −1.824 ± 1.782 −3.839 ± 5.007 0.398 ± 0.120 0.410 ± 0.167 0.428 ± 0.104 0.659 ± 0.117 0.668 ± 0.102 0.450 ± 0.287 0.346 ± 0.156 0.459 ± 0.142 0.392 ± 0.131
TTTAACA 0.625 ± 0.078 −17.397 ± 2.129 −1.782 ± 1.752 −3.724 ± 4.940 0.394 ± 0.115 0.410 ± 0.166 0.428 ± 0.103 0.661 ± 0.116 0.668 ± 0.102 0.450 ± 0.287 0.357 ± 0.167 0.461 ± 0.157 0.396 ± 0.138
6568_6571del 0.628 ± 0.078 −17.401 ± 2.130 −1.841 ± 1.788 −3.910 ± 4.956 0.398 ± 0.116 0.408 ± 0.162 0.418 ± 0.099 0.663 ± 0.116 0.668 ± 0.103 0.460 ± 0.290 0.347 ± 0.147 0.433 ± 0.132 0.376 ± 0.135
7338_7344del 0.627 ± 0.079 −17.408 ± 2.131 −1.844 ± 1.681 −3.969 ± 4.686 0.397 ± 0.106 0.406 ± 0.149 0.421 ± 0.095 0.663 ± 0.116 0.669 ± 0.103 0.459 ± 0.290 0.369 ± 0.127 0.457 ± 0.119 0.393 ± 0.109
7065_7066insG 0.629 ± 0.079 −17.394 ± 2.124 −1.843 ± 1.741 −4.048 ± 4.858 0.402 ± 0.112 0.406 ± 0.158 0.423 ± 0.097 0.662 ± 0.116 0.669 ± 0.102 0.458 ± 0.290 0.373 ± 0.164 0.431 ± 0.125 0.382 ± 0.127