TY - JOUR AU - Khush, G. S. PY - 1997 DA - 1997// TI - Origin, dispersal, cultivation and variation of rice JO - Plant Mol Biol VL - 35 UR - https://doi.org/10.1023/A:1005810616885 DO - 10.1023/A:1005810616885 ID - Khush1997 ER - TY - JOUR AU - Wing, R. A. AU - Ammiraju, J. S. S. AU - Luo, M. Z. X. AU - Kim, H. AU - Yu, Y. S. AU - Kudrna, D. PY - 2005 DA - 2005// TI - The Oryza Map Alignment Project: the golden path to unlocking the genetic potential of wild rice species JO - Plant Mol Biol VL - 59 UR - https://doi.org/10.1007/s11103-004-6237-x DO - 10.1007/s11103-004-6237-x ID - Wing2005 ER - TY - JOUR AU - Zhang, Q. F. AU - Li, J. Y. AU - Xue, Y. B. AU - Han, B. AU - Deng, X. W. PY - 2008 DA - 2008// TI - Rice 2020: a call for an international coordinated effort in rice functional genomics JO - Mol Plant VL - 1 UR - https://doi.org/10.1093/mp/ssn043 DO - 10.1093/mp/ssn043 ID - Zhang2008 ER - TY - BOOK AU - Oka, H. I. PY - 1988 DA - 1988// TI - Origin of Cultivated Rice PB - Japan Scientific Societies Press CY - Tokyo ID - Oka1988 ER - TY - JOUR AU - Sang, T. AU - Ge, S. PY - 2007 DA - 2007// TI - Genetics and phylogenetics of rice domestication JO - Curr Opin Genet Dev VL - 17 UR - https://doi.org/10.1016/j.gde.2007.09.005 DO - 10.1016/j.gde.2007.09.005 ID - Sang2007 ER - TY - JOUR AU - Sweeney, M. AU - McCouch, S. PY - 2007 DA - 2007// TI - The complex history of the domestication of rice JO - Ann Bot VL - 100 UR - https://doi.org/10.1093/aob/mcm128 DO - 10.1093/aob/mcm128 ID - Sweeney2007 ER - TY - JOUR AU - Glaszmann, J. C. PY - 1987 DA - 1987// TI - Isozymes and classification of Asian rice varieties JO - Theor Appl Genet VL - 74 UR - https://doi.org/10.1007/BF00290078 DO - 10.1007/BF00290078 ID - Glaszmann1987 ER - TY - JOUR AU - Ni, J. AU - Colowit, P. M. AU - Mackill, D. J. PY - 2002 DA - 2002// TI - Evaluation of genetic diversity in rice subspecies using microsatellite markers JO - Crop Sci VL - 42 UR - https://doi.org/10.2135/cropsci2002.0601 DO - 10.2135/cropsci2002.0601 ID - Ni2002 ER - TY - JOUR AU - Garris, A. J. AU - Tai, T. H. AU - Coburn, J. AU - Kresovich, S. AU - McCouch, S. PY - 2005 DA - 2005// TI - Genetic structure and diversity in Oryza sativa L JO - Genetics VL - 169 UR - https://doi.org/10.1534/genetics.104.035642 DO - 10.1534/genetics.104.035642 ID - Garris2005 ER - TY - JOUR AU - Caicedo, A. L. AU - Williamson, S. H. AU - Hernandez, R. D. AU - Boyko, A. AU - Fledel-Alon, A. AU - York, T. L. PY - 2007 DA - 2007// TI - Genome-wide patterns of nucleotide polymorphism in domesticated rice JO - PLoS Genet VL - 3 UR - https://doi.org/10.1371/journal.pgen.0030163 DO - 10.1371/journal.pgen.0030163 ID - Caicedo2007 ER - TY - JOUR AU - Ebana, K. AU - Yonemaru, J. AU - Fukuoka, S. AU - Iwata, H. AU - Kanamori, H. AU - Namiki, N. PY - 2010 DA - 2010// TI - Genetic structure revealed by a whole-genome single-nucleotide polymorphism survey of diverse accessions of cultivated Asian rice (Oryza sativa L.) JO - Breeding Sci VL - 60 UR - https://doi.org/10.1270/jsbbs.60.390 DO - 10.1270/jsbbs.60.390 ID - Ebana2010 ER - TY - JOUR AU - Zhao, K. Y. AU - Wright, M. AU - Kimball, J. AU - Eizenga, G. AU - McClung, A. AU - Kovach, M. PY - 2010 DA - 2010// TI - Genomic diversity and introgression in O. sativa reveal the impact of domestication and breeding on the rice genome JO - PLoS ONE VL - 5 UR - https://doi.org/10.1371/journal.pone.0010780 DO - 10.1371/journal.pone.0010780 ID - Zhao2010 ER - TY - JOUR AU - Huang, X. H. AU - Zhao, Y. AU - Wei, X. H. AU - Li, C. Y. AU - Wang, A. AU - Zhao, Q. PY - 2012 DA - 2012// TI - Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm JO - Nat Genet VL - 44 UR - https://doi.org/10.1038/ng.1018 DO - 10.1038/ng.1018 ID - Huang2012 ER - TY - JOUR AU - Wang, C. -. H. AU - Zheng, X. -. M. AU - Xu, Q. AU - Yuan, X. -. P. AU - Huang, L. AU - Zhou, H. -. F. PY - 2014 DA - 2014// TI - Genetic diversity and classification of Oryza sativa with emphasis on Chinese rice germplasm JO - Heredity VL - 112 UR - https://doi.org/10.1038/hdy.2013.130 DO - 10.1038/hdy.2013.130 ID - Wang2014 ER - TY - JOUR AU - Gao, L. Z. AU - ChiHong, Z. AU - LiPing, C. AU - JiZeng, J. AU - ZongEn, Q. AU - Dong, Y. S. PY - 2005 DA - 2005// TI - Microsatellite diversity within Oryza sativa with emphasis on indica-japonica divergence JO - Genet Res VL - 85 UR - https://doi.org/10.1017/S0016672304007293 DO - 10.1017/S0016672304007293 ID - Gao2005 ER - TY - JOUR AU - Prashanth, S. R. AU - Parani, M. AU - Mohanty, B. P. AU - Talame, V. AU - Tuberosa, R. AU - Parida, A. PY - 2002 DA - 2002// TI - Genetic diversity in cultivars and landraces of Oryza sativa subsp. indica as revealed by AFLP markers JO - Genome VL - 45 UR - https://doi.org/10.1139/g02-003 DO - 10.1139/g02-003 ID - Prashanth2002 ER - TY - JOUR AU - Barry, M. B. AU - Pham, J. L. AU - Noyer, J. L. AU - Courtois, B. AU - Billot, C. AU - Ahmadi, N. PY - 2007 DA - 2007// TI - Implications for in situ genetic resource conservation from the ecogeographical distribution of rice genetic diversity in Maritime Guinea JO - Plant Genet Resour VL - 5 UR - https://doi.org/10.1017/S1479262107390898 DO - 10.1017/S1479262107390898 ID - Barry2007 ER - TY - JOUR AU - Thomson, M. J. AU - Polato, N. R. AU - Prasetiyono, J. AU - Trijatmiko, K. R. AU - Silitonga, T. S. AU - McCouch, S. R. PY - 2009 DA - 2009// TI - Genetic diversity of isolated populations of Indonesian landraces of rice (Oryza sativa L.) collected in East Kalimantan on the island of Borneo JO - Rice VL - 2 UR - https://doi.org/10.1007/s12284-009-9023-1 DO - 10.1007/s12284-009-9023-1 ID - Thomson2009 ER - TY - JOUR AU - Oliveira Borba, T. C. AU - Brondani, R. P. AU - Rangel, P. H. AU - Brondani, C. PY - 2009 DA - 2009// TI - Microsatellite marker mediated analysis of the EMBRAPA Rice Core Collection genetic diversity JO - Genetica VL - 137 UR - https://doi.org/10.1007/s10709-009-9380-0 DO - 10.1007/s10709-009-9380-0 ID - Oliveira Borba2009 ER - TY - JOUR AU - Zhang, H. AU - Sun, J. AU - Wang, M. AU - Liao, D. AU - Zeng, Y. AU - Shen, S. PY - 2007 DA - 2007// TI - Genetic structure and phylogeography of rice landraces in Yunnan, China, revealed by SSR JO - Genome VL - 50 UR - https://doi.org/10.1139/g06-130 DO - 10.1139/g06-130 ID - Zhang2007 ER - TY - JOUR AU - Zhang, D. L. AU - Zhang, H. L. AU - Wang, M. X. AU - Sun, J. L. AU - Qi, Y. W. AU - Wang, F. PY - 2009 DA - 2009// TI - Genetic structure and differentiation of Oryza sativa L. in China revealed by microsatellites JO - Theor Appl Genet VL - 119 UR - https://doi.org/10.1007/s00122-009-1112-4 DO - 10.1007/s00122-009-1112-4 ID - Zhang2009 ER - TY - JOUR AU - Li, X. AU - Yan, W. AU - Agrama, H. AU - Hu, B. AU - Jia, L. AU - Jia, M. PY - 2010 DA - 2010// TI - Genotypic and phenotypic characterization of genetic differentiation and diversity in the USDA rice mini-core collection JO - Genetica VL - 138 UR - https://doi.org/10.1007/s10709-010-9521-5 DO - 10.1007/s10709-010-9521-5 ID - Li2010 ER - TY - JOUR AU - Vaughan, D. A. AU - Lu, B. R. AU - Tomooka, N. PY - 2008 DA - 2008// TI - The evolving story of rice evolution JO - Plant Sci VL - 174 UR - https://doi.org/10.1016/j.plantsci.2008.01.016 DO - 10.1016/j.plantsci.2008.01.016 ID - Vaughan2008 ER - TY - JOUR AU - Hore, D. K. PY - 2005 DA - 2005// TI - Rice diversity collection, conservation and management in North-eastern India JO - Genet Resour Crop Evol VL - 52 UR - https://doi.org/10.1007/s10722-004-6084-2 DO - 10.1007/s10722-004-6084-2 ID - Hore2005 ER - TY - STD TI - Government of India. Basic statistics of North Eastern region 2015. Government of India, North Eastern Council Secretariat, Nongrim Hills, Shillong, India; 2015.p.411 ID - ref25 ER - TY - STD TI - Directorate of Rice Development (2015) State-wise rice productivity analysis, State: Arunachal Pradesh. Directorate of rice development, Department of Agriculture and Co-operation, Patna, Bihar; http://drdpat.bih.nic.in. Accessed 30 December, 2015. UR - http://drdpat.bih.nic.in ID - ref26 ER - TY - JOUR AU - Sthapit, B. R. PY - 1992 DA - 1992// TI - Chilling injury of rice crop in Nepal: A review JO - J Inst Agric Anim Sci VL - 13 ID - Sthapit1992 ER - TY - JOUR AU - McCouch, S. R. AU - Wright, M. H. AU - Tung, C. -. W. AU - Maron, L. G. AU - McNally, K. L. AU - Fitzgerald, M. PY - 2016 DA - 2016// TI - Open access resources for genome-wide association mapping in rice JO - Nat Commun VL - 7 UR - https://doi.org/10.1038/ncomms10532 DO - 10.1038/ncomms10532 ID - McCouch2016 ER - TY - BOOK PY - 1980 DA - 1980// TI - Descriptors for rice (Oryza sativa L.) IBPGR-IRRI Rice Advisory Committee PB - IRRI CY - Manila ID - ref29 ER - TY - JOUR AU - Roy, S. AU - Banerjee, A. AU - Mawkhlieng, B. AU - Misra, A. K. AU - Pattanayak, A. AU - Harish, G. D. PY - 2015 DA - 2015// TI - Genetic diversity and population structure in aromatic and quality rice (Oryza sativa L.) landraces from North-Eastern India JO - PLoS ONE VL - 10 UR - https://doi.org/10.1371/journal.pone.0129607 DO - 10.1371/journal.pone.0129607 ID - Roy2015 ER - TY - BOOK PY - 2011 DA - 2011// TI - IBM SPSS Statistics for Windows, version 20.0 PB - IBM Corp CY - Armonk ID - ref31 ER - TY - JOUR AU - Pritchard, J. K. AU - Stephens, M. AU - Donnelly, P. PY - 2000 DA - 2000// TI - Inference of population structure using multilocus genotype data JO - Genetics VL - 155 ID - Pritchard2000 ER - TY - JOUR AU - Evanno, G. AU - Regnaut, S. AU - Goudet, J. PY - 2005 DA - 2005// TI - Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study JO - Mol Ecol VL - 14 UR - https://doi.org/10.1111/j.1365-294X.2005.02553.x DO - 10.1111/j.1365-294X.2005.02553.x ID - Evanno2005 ER - TY - JOUR AU - Liu, K. J. AU - Muse, S. V. PY - 2005 DA - 2005// TI - PowerMarker: an integrated analysis environment for genetic marker analysis JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti282 DO - 10.1093/bioinformatics/bti282 ID - Liu2005 ER - TY - JOUR AU - Goudet, J. PY - 1995 DA - 1995// TI - FSTAT version 1.2: a computer program to calculate F statistics JO - J Hered VL - 86 ID - Goudet1995 ER - TY - JOUR AU - Peakall, R. AU - Smouse, P. E. PY - 2012 DA - 2012// TI - GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research-an update JO - Bioinformatics VL - 28 UR - https://doi.org/10.1093/bioinformatics/bts460 DO - 10.1093/bioinformatics/bts460 ID - Peakall2012 ER - TY - BOOK PY - 2016 DA - 2016// TI - R: A language and environment for statistical computing PB - R Foundation for Statistical Computing CY - Vienna ID - ref37 ER - TY - JOUR AU - Fu, Y. B. AU - Peterson, G. W. AU - Scoles, G. AU - Rossnagel, B. AU - Schoen, D. J. AU - Richards, K. W. PY - 2003 DA - 2003// TI - Allelic diversity changes in 96 Canadian oat cultivars released from 1886 to 2001 JO - Crop Sci VL - 43 UR - https://doi.org/10.2135/cropsci2003.1989 DO - 10.2135/cropsci2003.1989 ID - Fu2003 ER - TY - BOOK AU - Rohlf, F. PY - 1997 DA - 1997// TI - NTSYS-pc: Numerical Taxonomy and Multivariate Analysis System, Version 2.00 PB - Exeter Software CY - Setauket ID - Rohlf1997 ER - TY - JOUR AU - Cavalli-Sforza, L. L. AU - Edwards, A. W. F. PY - 1967 DA - 1967// TI - Phylogentic analysis. Models and estimation procedures JO - Am J Hum Genet VL - 19 ID - Cavalli-Sforza1967 ER - TY - JOUR AU - Huson, D. H. AU - Scornavacca, C. PY - 2012 DA - 2012// TI - Dendroscope 3 - An interactive viewer for rooted phylogenetic trees and networks JO - Syst Biol VL - 61 UR - https://doi.org/10.1093/sysbio/sys062 DO - 10.1093/sysbio/sys062 ID - Huson2012 ER - TY - JOUR AU - Fukuoka, S. AU - Suu, T. AU - Ebana, K. AU - Trinh, L. AU - Nagamine, T. AU - Okuno, K. PY - 2006 DA - 2006// TI - Diversity in phenotypic profiles in landrace populations of Vietnamese rice: a case study of agronomic characters for conserving crop genetic diversity on farm JO - Genet Resour Crop Evol VL - 53 UR - https://doi.org/10.1007/s10722-004-4635-1 DO - 10.1007/s10722-004-4635-1 ID - Fukuoka2006 ER - TY - JOUR AU - Rana, R. B. AU - Garforth, C. AU - Sthapit, B. AU - Jarvis, D. PY - 2007 DA - 2007// TI - Influence of socio-economic and cultural factors in rice varietal diversity management on-farm in Nepal JO - Agric Human Values VL - 24 UR - https://doi.org/10.1007/s10460-007-9082-0 DO - 10.1007/s10460-007-9082-0 ID - Rana2007 ER - TY - JOUR AU - Sharma, R. C. AU - Chaudhary, N. K. AU - Ojha, B. AU - Yadav, L. AU - Pandey, M. P. AU - Shrestha, S. M. PY - 2007 DA - 2007// TI - Variation in rice landraces adapted to the lowlands and hills in Nepal JO - Plant Genet Resour: Charact Util VL - 5 UR - https://doi.org/10.1017/S1479262107837828 DO - 10.1017/S1479262107837828 ID - Sharma2007 ER - TY - JOUR AU - Bajracharya, J. AU - Rana, R. B. AU - Gauchan, D. AU - Sthapit, B. R. AU - Jarvis, D. I. AU - Witcombe, J. R. PY - 2010 DA - 2010// TI - Rice landrace diversity in Nepal. Socio-economic and ecological factors determining rice landrace diversity in three agro-ecozones of Nepal based on farm surveys JO - Genet Resour Crop Evol VL - 57 UR - https://doi.org/10.1007/s10722-010-9544-x DO - 10.1007/s10722-010-9544-x ID - Bajracharya2010 ER - TY - CHAP AU - Sthapit, B. R. AU - Joshi, K. D. AU - Rana, R. B. AU - Upadhayay, M. P. AU - Eyzaguirre, P. AU - Jarvis, D. PY - 2000 DA - 2000// TI - Enhancing biodiversity and production through participatory plant breeding: setting breeding goals BT - An exchange of experiences from South and South East Asia. Proceedings of the International Symposium on Participatory Plant Genetic Resource Enhancement ID - Sthapit2000 ER - TY - JOUR AU - Roy, S. AU - Rathi, R. S. AU - Misra, A. K. AU - Bhatt, B. P. AU - Bhandari, D. C. PY - 2014 DA - 2014// TI - Phenotypic characterization of indigenous rice (Oryza sativa L.) germplasm collected from the state of Nagaland JO - Plant Genet Resour: Charact Util VL - 12 UR - https://doi.org/10.1017/S1479262113000282 DO - 10.1017/S1479262113000282 ID - Roy2014 ER - TY - JOUR AU - Bajracharya, J. AU - Steele, K. A. AU - Jarvis, D. I. AU - Sthapit, B. R. AU - Witcombe, J. R. PY - 2006 DA - 2006// TI - Rice landrace diversity in Nepal: variability of agro-morphological traits and SSR markers in landraces from a high-altitude site JO - Field Crop Res VL - 95 UR - https://doi.org/10.1016/j.fcr.2005.04.014 DO - 10.1016/j.fcr.2005.04.014 ID - Bajracharya2006 ER - TY - JOUR AU - Mathure, S. AU - Shaikh, A. AU - Renuka, N. AU - Wakte, K. AU - Jawali, N. AU - Thengane, R. AU - Nadaf, A. PY - 2011 DA - 2011// TI - Characterisation of aromatic rice (Oryza sativa L.) germplasm and correlation between their agronomic and quality traits JO - Euphytica VL - 179 UR - https://doi.org/10.1007/s10681-010-0294-9 DO - 10.1007/s10681-010-0294-9 ID - Mathure2011 ER - TY - JOUR AU - Pessoa-Filho, M. AU - Beló, A. AU - Alcochete, A. AU - Rangel, P. AU - Ferreira, M. PY - 2007 DA - 2007// TI - A set of multiplex panels of microsatellite markers for rapid molecular characterization of rice accessions JO - BMC Plant Biol VL - 7 UR - https://doi.org/10.1186/1471-2229-7-23 DO - 10.1186/1471-2229-7-23 ID - Pessoa-Filho2007 ER - TY - JOUR AU - Ueno, K. AU - Sato, T. AU - Takahashi, N. PY - 1990 DA - 1990// TI - The indica-japonica classification of Asian rice ecotypes and Japanese lowland and upland rice (Oryza sativa L.) JO - Euphytica VL - 46 UR - https://doi.org/10.1007/BF00022310 DO - 10.1007/BF00022310 ID - Ueno1990 ER - TY - JOUR AU - Ge, X. J. AU - Xing, Y. Z. AU - Xu, C. G. AU - He, Y. Q. PY - 2005 DA - 2005// TI - QTL analysis of cooked rice grain elongation, volume expansion, and water absorption using a recombinant inbred population JO - Plant Breed VL - 124 UR - https://doi.org/10.1111/j.1439-0523.2004.01055.x DO - 10.1111/j.1439-0523.2004.01055.x ID - Ge2005 ER - TY - JOUR AU - Bai, X. AU - Luo, L. AU - Yan, W. AU - Rao, M. K. AU - Zhan, W. AU - Xing, Y. PY - 2010 DA - 2010// TI - Genetic dissection of rice grain shape using a recombinant inbred line population derived from two contrasting parents and fine mapping a pleiotropic quantitative trait locus qGL7 JO - BMC Genet VL - 11 UR - https://doi.org/10.1186/1471-2156-11-16 DO - 10.1186/1471-2156-11-16 ID - Bai2010 ER - TY - JOUR AU - Das, B. AU - Sengupta, S. AU - Parida, S. K. AU - Roy, B. AU - Ghosh, M. AU - Prasad, M. PY - 2013 DA - 2013// TI - Genetic diversity and population structure of rice landraces from Eastern and North Eastern states of India JO - BMC Genet VL - 14 UR - https://doi.org/10.1186/1471-2156-14-71 DO - 10.1186/1471-2156-14-71 ID - Das2013 ER - TY - JOUR AU - Ren, X. AU - Jiang, H. AU - Yan, Z. AU - Chen, Y. AU - Zhou, X. AU - Huang, L. PY - 2014 DA - 2014// TI - Genetic diversity and population structure of the major peanut (Arachis hypogaea L.) cultivars grown in China by SSR markers JO - PLoS ONE VL - 9 UR - https://doi.org/10.1371/journal.pone.0088091 DO - 10.1371/journal.pone.0088091 ID - Ren2014 ER - TY - JOUR AU - Ali, M. L. AU - McClung, A. M. AU - Jia, M. H. AU - Kimball, J. A. AU - McCouch, S. R. AU - Eizenga, G. C. PY - 2011 DA - 2011// TI - A rice diversity panel evaluated for genetic and agro-morphological diversity between subpopulations and its geographic distribution JO - Crop Sci VL - 51 UR - https://doi.org/10.2135/cropsci2010.06.0359 DO - 10.2135/cropsci2010.06.0359 ID - Ali2011 ER - TY - JOUR AU - Huang, X. AU - Kurata, N. AU - Wei, X. AU - Wang, Z. -. X. AU - Wang, A. AU - Zhao, Q. PY - 2012 DA - 2012// TI - A map of rice genome variation reveals the origin of cultivated rice JO - Nature VL - 490 UR - https://doi.org/10.1038/nature11532 DO - 10.1038/nature11532 ID - Huang2012 ER - TY - JOUR AU - Travis, A. J. AU - Norton, G. J. AU - Datta, S. AU - Sarma, R. AU - Dasgupta, T. AU - Savio, F. L. PY - 2015 DA - 2015// TI - Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal JO - Rice VL - 8 UR - https://doi.org/10.1186/s12284-015-0068-z DO - 10.1186/s12284-015-0068-z ID - Travis2015 ER - TY - JOUR AU - Choudhury, B. AU - Khan, M. L. AU - Dayanandan, S. PY - 2013 DA - 2013// TI - Genetic structure and diversity of indigenous rice varieties (Oryza sativa) in Eastern Himalayan region of Northeast India JO - Springer Plus VL - 2 UR - https://doi.org/10.1186/2193-1801-2-228 DO - 10.1186/2193-1801-2-228 ID - Choudhury2013 ER - TY - JOUR AU - Fu, Y. B. AU - Wangsomnuk, P. P. AU - Ruttawa, B. PY - 2014 DA - 2014// TI - Thai elite cassava genetic diversity was fortuitously conserved through farming with different sets of varieties JO - Conserv Genet VL - 15 UR - https://doi.org/10.1007/s10592-014-0631-y DO - 10.1007/s10592-014-0631-y ID - Fu2014 ER -