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Table 2 The comparisons of call rates and accuracy on HapMap samples for overall SNPs

From: A new model calling procedure for Illumina BeadArray data

Criterion Item GenCall (%) GenoSNP (%) M-D (%)
All SNPs Call rate 96.79 99.14 99.78
  Accuracy 96.63 98.52 99.44
  1. Note: M-D: a new model calling procedure; Call rate: the percentage of valid genotypes; Accuracy: the percentage of consistent genotype between each calling method and the gold standard