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Table 1 Unique polymorphic sites that distinguish mtDNA haplotypes A to E

From: The relationship between mitochondrial DNA haplotype and the reproductive capacity of domestic pigs (Sus scrofa domesticus)

Reference sequence (Accession: AJ002189.1) position

Haplotype A (Accession: KT279758)

Haplotype B (Accession: KT261429)

Haplotype C (Accession: KT279759)

Haplotype D (Accession: KT279760)

Haplotype E (Accession: KT261430)

Overlapping gene

ETC complex

Amino acid change

2309

  

2309 insT

  

16S rRNA

  

2312

 

2312 C > T

   

16S rRNA

  

3060

   

3060 C > T

 

NADH1

I

 

4179

  

4179 T > C

  

NADH2

I

 

4897

   

4897 A > G

 

NADH2

I

CAA05230.1:p.

Ile330Val

5585

  

5585 G > A

  

COI

IV

 

6053

  

6053 C > T

  

COI

IV

 

6212

  

6212 C > T

  

COI

IV

 

6359

  

6359 G > A

  

COI

IV

 

6879

 

6879 G > A

      

7430

  

7430 A > G

  

COII

IV

 

8116

8116 A > G

    

ATPase 6

V

CAA05234.1:p.I

le58Met

9758

 

9758 C > A

   

NADH3

I

CAA05236.1:p.

Leu95Ile

10283

  

10283 T > C

  

NADH4

I

 

10629

   

10629 C > T

 

NADH4

I

 

12216

12216 G > C

    

NADH5

I

 

13424

   

13424 T > C

 

NADH5

I

CAA05241.1:p.

Ile556Thr

13529

    

13529 T > C

NADH5

I

CAA05241.1:p.

Ser591Phe

13898

  

13898 C > T

  

NADH6

I

CAA05238.1:p.

Met64Ile

14378

  

14378 C > T

  

CYTB

III

 

14594

  

14594 G > A

  

CYTB

III

 

15212

  

15212 C > T

  

CYTB

III

 

15615

    

15615 C > T

D-loop

  

15675

15675 T > C

    

D-loop

  

15758

   

15758 T > C

 

D-loop

  

15840

15840 T > C

    

D-loop

  

15936

  

15936 A > G

  

D-loop

  

16127

    

16127 G > A

D-loop

 Â