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Table 4 Targets of known miRNAs identified by degradome sequencing.

From: Combined small RNA and degradome sequencing to identify miRNAs and their targets in response to drought in foxtail millet

Family Target gene Cleave position category Alignment score Target gene annotation
miR156 Si013870m 837 0 1 SBP-box gene family member
Si006471m 1311 0 1 SBP-box gene family member
Si031154m 736 2 2 SBP-box gene family member
Si013747m 981 0 1 SBP-box gene family member
Si006472m 1210 0 1 SBP-box gene family member
Si017749m 758 0 1 SBP-box gene family member
Si030195m 924 2 1 SBP-box gene family member
Si030892m 577 0 1 SBP-box gene family member
Si026656m 904 0 2 SBP-box gene family member
Si013308m 134 2 2.5 lectin-like protein kinase
Si001804m 1444 0 1 SBP-box gene family member
miR159 Si000907m 970 0 1 myb domain protein 33 (MYB 33)
Si002023m 493 1 3 unknown
Si039629m 895 1 2 myb domain protein 101 (MYB101)
miR160 Si021833m 1181 0 1 auxin response factor 17 (ARF17)
Si005991m 1767 0 2 auxin response factor 16 (ARF16)
Si009541m 1349 0 2 auxin response factor 16 (ARF16)
Si016559m 1481 0 3 auxin response factor 16 (ARF16)
Si034525m 1328 0 2 auxin response factor 16 (ARF16)
Si016509m 1364 0 3 auxin response factor 16 (ARF16)
miR162 Si010280m 2108 2 3 Adenosylmethionine decarboxylase family protein
Si033853m 3138 0 1 dicer-like 1
Si010282m 1537 2 3 Adenosylmethionine decarboxylase family protein
Si002017m 941 2 2.5 NADP-dependent oxidoreductase
miR164 Si006975m 855 0 1/2 NAC domain containing protein
Si017567m 864 0 3 NAC domain containing protein
Si010553m 724 0 3 NAC domain containing protein
Si017570m 840 0 3 NAC domain containing protein
Si022747m 791 0 2 NAC domain containing protein
Si017931m 968 0 3 NAC domain containing protein
Si011317m 399 3 4 photosystem I subunit
Si011389m 399 3 4 photosystem I subunit
miR166 Si034228m 851 0 2.5/3 Homeobox-leucine zipper family protein (HD-Zip)
Si021201m 750 1 2.5/3 Homeobox-leucine zipper family protein (HD-Zip)
Si034254m 799 0 2.5/3 Homeobox-leucine zipper family protein (HD-Zip)
Si034251m 963 0 2.5/3 Homeobox-leucine zipper family protein (HD-Zip)
Si000283m 577 4 2.5 Homeobox-leucine zipper family protein (HD-Zip)
miR167 Si021157m 3055 0 4 auxin response factor 8 (ARF8)
Si000404m 2361 2 3.5 ARF
miR171 Si016508m 1082/1085 0/2 0.5/1.5 GRAS family transcription factor
Si006258m 506/503 0/2 0.5/1.5 GRAS family transcription factor
Si034686m 1001 1 2.5 Microtubule associated protein (MAP65/ASE1) family protein
Si039098m 923 0 1.5 GRAS family transcription factor
miR172 Si018249m 597 0 3.5 cis-trans isomerase family protein
miR393 Si008122m 462 0 4.5 tesmin/TSO1-like CXC domain containing protein
miR396 Si035794m 679 0 2 growth-regulating factor 2(GRF2)
Si008818m 662 0 2 growth-regulating factor 5(GRF5)
Si026680m 329 0 2.5 growth-regulating factor 2(GRF2)
Si011853m 935 0 2 growth-regulating factor 5(GRF5)
Si034822m 896 0 2.5 growth-regulating factor 1(GRF1)
miR827 Si009522m 197 0 1 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein
Si009706m 197 0 1 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein
Si016510m 313 0 3 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein
Si009851m 197 0 1 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein
Si016511m 313 0 3 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein
Si009523m 197 0 1 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein