Table 4 Targets of known miRNAs identified by degradome sequencing.

miR156

Si013870m

837

0

1

SBP-box gene family member

Si006471m

1311

0

1

SBP-box gene family member

Si031154m

736

2

2

SBP-box gene family member

Si013747m

981

0

1

SBP-box gene family member

Si006472m

1210

0

1

SBP-box gene family member

Si017749m

758

0

1

SBP-box gene family member

Si030195m

924

2

1

SBP-box gene family member

Si030892m

577

0

1

SBP-box gene family member

Si026656m

904

0

2

SBP-box gene family member

Si013308m

134

2

2.5

lectin-like protein kinase

Si001804m

1444

0

1

SBP-box gene family member

miR159

Si000907m

970

0

1

myb domain protein 33 (MYB 33)

Si002023m

493

1

3

unknown

Si039629m

895

1

2

myb domain protein 101 (MYB101)

miR160

Si021833m

1181

0

1

auxin response factor 17 (ARF17)

Si005991m

1767

0

2

auxin response factor 16 (ARF16)

Si009541m

1349

0

2

auxin response factor 16 (ARF16)

Si016559m

1481

0

3

auxin response factor 16 (ARF16)

Si034525m

1328

0

2

auxin response factor 16 (ARF16)

Si016509m

1364

0

3

auxin response factor 16 (ARF16)

miR162

Si010280m

2108

2

3

Adenosylmethionine decarboxylase family protein

Si033853m

3138

0

1

dicer-like 1

Si010282m

1537

2

3

Adenosylmethionine decarboxylase family protein

Si002017m

941

2

2.5

NADP-dependent oxidoreductase

miR164

Si006975m

855

0

1/2

NAC domain containing protein

Si017567m

864

0

3

NAC domain containing protein

Si010553m

724

0

3

NAC domain containing protein

Si017570m

840

0

3

NAC domain containing protein

Si022747m

791

0

2

NAC domain containing protein

Si017931m

968

0

3

NAC domain containing protein

Si011317m

399

3

4

photosystem I subunit

Si011389m

399

3

4

photosystem I subunit

miR166

Si034228m

851

0

2.5/3

Homeobox-leucine zipper family protein (HD-Zip)

Si021201m

750

1

2.5/3

Homeobox-leucine zipper family protein (HD-Zip)

Si034254m

799

0

2.5/3

Homeobox-leucine zipper family protein (HD-Zip)

Si034251m

963

0

2.5/3

Homeobox-leucine zipper family protein (HD-Zip)

Si000283m

577

4

2.5

Homeobox-leucine zipper family protein (HD-Zip)

miR167

Si021157m

3055

0

4

auxin response factor 8 (ARF8)

Si000404m

2361

2

3.5

ARF

miR171

Si016508m

1082/1085

0/2

0.5/1.5

GRAS family transcription factor

Si006258m

506/503

0/2

0.5/1.5

GRAS family transcription factor

Si034686m

1001

1

2.5

Microtubule associated protein (MAP65/ASE1) family protein

Si039098m

923

0

1.5

GRAS family transcription factor

miR172

Si018249m

597

0

3.5

cis-trans isomerase family protein

miR393

Si008122m

462

0

4.5

tesmin/TSO1-like CXC domain containing protein

miR396

Si035794m

679

0

2

growth-regulating factor 2(GRF2)

Si008818m

662

0

2

growth-regulating factor 5(GRF5)

Si026680m

329

0

2.5

growth-regulating factor 2(GRF2)

Si011853m

935

0

2

growth-regulating factor 5(GRF5)

Si034822m

896

0

2.5

growth-regulating factor 1(GRF1)

miR827

Si009522m

197

0

1

Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein

Si009706m

197

0

1

Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein

Si016510m

313

0

3

Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein

Si009851m

197

0

1

Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein

Si016511m

313

0

3

Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein

Si009523m

197

0

1

Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein