Table 1 The number of significant SNPs (- log₁₀(p) ≥8.50) for each trait and how SNPs are divided into different consequences. SNPs were annotated with the variant effect predictor –tool [28]. One SNP can have more than one annotation

Trait

Number of significant SNPs

Intron variant

Intergenic variant

Downstream gene variant

Upstream gene variant

Synonymous variant

Missense variant

3′ UTR variant

Splice region variant, intron variant

5′ UTR variant

Splice region variant, synonymous variant