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Table 2 PIC value among sub-groups of SNPs used in Fig. 3 and their genes identified by BLAST

From: The genetic diversity and structure of indica rice in China as detected by single nucleotide polymorphism analysis

SNP name

Chr.

Position

MSU locus

Cloned

PIC

Local varieties

Introduced varieties

Improved varieties

seq-rs1556

3

10952279

LOC_Os03g19480

SDG718

0.1423

0.3201

0.3629

seq-rs1557

3

10965826

LOC_Os03g19510

OsClpP5

0.2103

0.3750

0.3739

seq-rs1558

3

10976468

LOC_Os03g19520

/

0.1521

0.3142

0.3629

seq-rs2740

6

3066751

LOC_Os06g06540

/

0.3423

0.3716

0.3233

seq-rs2741

6

3080670

LOC_Os06g06560

OsSSI

0.2179

0.3632

0.3233

seq-rs2750

6

3188215

LOC_Os06g06770

/

0.3655

0.1788

0.2824

seq-rs3198

7

4573557

LOC_Os07g08840

OsTRXh1

0.3250

0.2617

0.1948

seq-rs3199

7

4606495

LOC_Os07g08880

/

0.1544

0.0208

0.1462

seq-rs3200

7

4664150

LOC_Os07g08970

/

0.0000

0.1735

0.0213

seq-rs3201

7

4708187

LOC_Os07g09020

/

0.0000

0.0000

0.0000

seq-rs3202

7

4710622

LOC_Os07g09020

/

0.0593

0.1853

0.1462