From: Exome sequencing in one family with gastric- and rectal cancer
Chrom:Positiona | Ref | Obs | dbSNP | Func | Gene | Exonic function | 1000G | 249 patients | 98 CRC casesb | F1 | F2 | F3 | F4 | F5 | c | d | e |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3:137786496 | G | A | Â | exonic | DZIP1L | stopgain SNV | Â | Â | 0.0051 | N | - | - | N | D | Â | Â | 1 |
3:137790616 | C | T | rs150466957 | exonic | DZIP1L | ns SNV | 0.0009 | Â | 0.0051 | N | D | P | N | N | Â | Â | 1 |
3:137813726 | G | A | rs148594666 | exonic | DZIP1L | ns SNV | 0.0009 | Â | 0.0051 | C | T | P | N | N | 1 | Â | Â |
3:142539852 | C | T | Â | exonic | PCOLCE2 | ns SNV | Â | 0.002 | 0.0051 | C | T | B | D | N | Â | Â | 1 |
3:142548681 | C | T | rs140721173 | exonic | PCOLCE2 | ns SNV | 0.0009 | 0.002 | 0.0051 | N | T | B | D | D | Â | Â | 1 |
3:151163838 | T | C | rs34114908 | exonic | IGSF10 | ns SNV | 0.01 | 0.01 | 0.0357 | N | D | B | N | N | Â | 2 | 3 |
3:151165241 | G | C | rs142202060 | exonic | IGSF10 | ns SNV | 0.0005 | 0.004 | 0.0102 | C | D | P | N | N | Â | 1 | Â |
3:151165532 | G | C | rs35667704 | exonic | IGSF10 | ns SNV | 0.0037 | 0.0141 | 0.0153 | N | D | P | N | N | Â | 1 | 1 |
3:151166124 | A | G | rs146828199 | exonic | IGSF10 | ns SNV | Â | Â | 0.0051 | C | D | D | N | D | Â | Â | 1 |
9:107332377 | T | A | rs76017116 | exonic | OR13C8 | ns SNV | 0.01 | 0.004 | 0.0153 | C | D | B | D | D | Â | Â | 3 |
9:111954616 | C | T | rs199718023 | exonic | EPB41L4B | ns SNV | Â | Â | 0.0051 | C | D | B | N | N | Â | Â | 1 |
9:111954622 | C | T | rs201059767 | exonic | EPB41L4B | ns SNV | Â | Â | 0 | C | D | B | N | N | Â | Â | 1 |
9:112029768 | C | T | Â | exonic | EPB41L4B | ns SNV | Â | Â | 0.0051 | C | T | B | N | - | 1 | Â | Â |
9:112082510 | C | T | rs117569740 | exonic | EPB41L4B | ns SNV | 0.14 | 0.1124 | 0.1531 | C | D | B | - | - | 8 | 4 | 14 |
9:139345847 | G | A | rs45519739 | exonic | SEC16A | ns SNV | 0.01 | Â | 0.0153 | Â | Â | Â | Â | Â | 1 | Â | 1 |
9:139348749 | G | A | rs79974534 | exonic | SEC16A | ns SNV | 0.01 | 0.0141 | 0.0306 | Â | Â | Â | Â | Â | 1 | 1 | 2 |
9:139360781 | G | A | rs199798606 | exonic | SEC16A | ns SNV | Â | 0.004 | 0.0051 | Â | Â | Â | Â | Â | Â | Â | 1 |
9:139368953 | G | A | rs3812594 | exonic | SEC16A | ns SNV | 0.16 | 0.2048 | 0.2653 | Â | Â | Â | Â | Â | 9 | 9 | 17 |
9:139369066 | G | A | rs148167113 | exonic | SEC16A | ns SNV | 0.01 | 0.004 | 0.0153 | Â | Â | Â | Â | Â | 1 | Â | 2 |
9:139369091 | C | T | rs11788702 | exonic | SEC16A | ns SNV | 0.0005 | Â | 0.0051 | Â | Â | Â | Â | Â | Â | Â | 1 |
9:139369408 | C | T | rs200238338 | exonic | SEC16A | ns SNV | Â | Â | 0.0051 | Â | Â | Â | Â | Â | 1 | Â | Â |
9:139369816 | G | C | rs200394508 | exonic | SEC16A | ns SNV | Â | Â | 0.0204 | Â | Â | Â | Â | Â | 1 | Â | 3 |
9:139370955 | del9 | - | Â | exonic | SEC16A | non-frameshift deletion | Â | 0.008 | 0.0153 | Â | Â | Â | Â | Â | 1 | Â | 2 |
9:139401233 | C | T | rs61751543 | exonic | NOTCH1 | ns SNV | 0.01 | 0.01 | 0.0204 | C | T | D | D | D | 2 | Â | 2 |
9:139409775 | C | T | rs201077220 | exonic | NOTCH1 | ns SNV | 0.0009 | Â | 0.0051 | C | T | B | - | D | Â | Â | 1 |
12:10954258 | C | T | rs619381 | exonic | TAS2R7 | ns SNV | 0.07 | 0.0884 | 0.1173 | N | T | D | N | N | 1 | 5 | 12 |
12:10954583 | A | T | rs139604652 | exonic | TAS2R7 | ns SNV | 0.0032 | Â | 0.0051 | C | D | D | N | N | Â | Â | 1 |
22:30742345 | T | G | Â | exonic | SF3A1 | ns SNV | Â | Â | 0.0102 | C | T | P | D | D | Â | Â | 2 |
22:30953280 | C | T | rs55674628 | exonic | GAL3ST1 | ns SNV | 0.01 | 0.0161 | 0.0204 | C | T | B | N | N | 2 | Â | 3 |
22:38120338 | G | A | Â | exonic | TRIOBP | ns SNV | Â | Â | 0.0051 | N | - | D | - | - | 1 | Â | Â |
22:38120542 | C | T | rs142024473 | exonic | TRIOBP | ns SNV | 0.03 | 0.0201 | 0.0459 | C | - | P | - | - | 1 | 1 | 6 |
22:38120985 | A | G | Â | exonic | TRIOBP | ns SNV | Â | Â | 0.0051 | N | - | D | - | - | 1 | Â | Â |
22:38121040 | C | T | rs41296243 | exonic | TRIOBP | ns SNV | 0.01 | 0.0201 | 0.0306 | N | - | P | - | - | 2 | 1 | 2 |
22:38121795 | C | T | rs200359708 | exonic | TRIOBP | ns SNV | 0.0018 | Â | 0.0051 | C | - | D | - | - | 1 | Â | Â |
22:38122414 | AG | - | Â | exonic | TRIOBP | frameshift deletion | Â | Â | 0.0051 | Â | Â | Â | Â | Â | Â | Â | 2 |
22:38129388 | G | A | rs34066624 | exonic | TRIOBP | ns SNV | 0.0023 | 0.008 | 0.0204 | C | - | - | - | - | 1 | Â | 3 |