Skip to main content

Table 3 Average r 2 ± SD for adjacent SNP according to marker panel density

From: Linkage disequilibrium, persistence of phase and effective population size estimates in Hereford and Braford cattle

% SNP kepta Hereford Braford
Average r 2 Average distance (Kb) Average r 2 Average distance (Kb)
50 % 0.15 ± 0.21 121.80 0.12 ± 0.17 121.83
25 % 0.11 ± 0.16 243.57 0.09 ± 0.13 243.00
20 % 0.09 ± 0.14 304.22 0.08 ± 0.11 303.78
17 % 0.09 ± 0.14 364.97 0.07 ± 0.11 364.47
14 % 0.08 ± 0.13 425.83 0.07 ± 0.10 425.30
7 % 0.07 ± 0.10 850.22 0.06 ± 0.09 849.50
  1. aIn relation to the total number of SNP obtained for each population after the quality control (41,207 SNP in Hereford and 41,241 SNP in Braford)
\