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Table 3 Average r 2 ± SD for adjacent SNP according to marker panel density

From: Linkage disequilibrium, persistence of phase and effective population size estimates in Hereford and Braford cattle

% SNP kepta

Hereford

Braford

Average r 2

Average distance (Kb)

Average r 2

Average distance (Kb)

50 %

0.15 ± 0.21

121.80

0.12 ± 0.17

121.83

25 %

0.11 ± 0.16

243.57

0.09 ± 0.13

243.00

20 %

0.09 ± 0.14

304.22

0.08 ± 0.11

303.78

17 %

0.09 ± 0.14

364.97

0.07 ± 0.11

364.47

14 %

0.08 ± 0.13

425.83

0.07 ± 0.10

425.30

7 %

0.07 ± 0.10

850.22

0.06 ± 0.09

849.50

  1. aIn relation to the total number of SNP obtained for each population after the quality control (41,207 SNP in Hereford and 41,241 SNP in Braford)