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Table 1 The annotated genes between 500 kb downstream and 500 kb upstream of the 50 SNPs with the lowest p value from the GWAS

From: Genetic determinants of pig birth weight variability

No SNP name Pig chromosome Position (Mb) P value Adjacent genesa (±0.5 Mb) Distanceb (bp)
1 ALGA0007307 1 206.50 0.0003 PELI2, TMEM260, OTX2, EXOC5 within
2 DRGA0004275 3 129.20 0.0004 FAM49A within
3 ALGA0083116 14 149.00 0.0006 FOXI2, NPS, PTPRE, MKI67 within
4 ALGA0083057 14 147.76 0.0006 FAM196A 488070
5 ASGA0040051 8 139.04 0.0006 MMRN1, SNCA, GPRIN3 293849
6 MARC0115245 13 188.57 0.0007 NAc  
7 ASGA0061743 14 16.41 0.0008 GATA4,NEIL2,FDFT1, CTSB, DEFB134, ADAM29 −44520
8 DIAS0000130 7 39.09 0.0010 ZFAND3, BTBD9, GLO1, DNAH8 within
9 DRGA0013238 13 188.95 0.0010 LIPI 380204
10 DRGA0008884 8 139.01 0.0011 MMRN1 , SNCA, GPRIN3 317059
11 H3GA0039777 14 37.65 0.0012 NOS1, FBXO21 , TESC, FBXW8, RNFT2 within
12 ALGA0114335 8 17.21 0.0012 ADGRA3, GBA3 within
13 ALGA0040467 7 38.40 0.0012 CCDC167, MDGA1 ,ZFAND3 −227337
14 ALGA0040474 7 38.89 0.0012 CPNE5, PPIL1, PI16, MTCH1, FGD2, PIM1, TMEM217, TBC1D22B, RNF8, ZFAND3 , CCDC167, MDGA1 −142259
15 ASGA0083383 18 17.18 0.0012 CHCHD3 within
16 ALGA0097813 18 32.55 0.0013 TFEC −338821
17 H3GA0020922 7 38.06 0.0013 FGD2, PIM1, TMEM217, TBC1D22B, RNF8, CCDC167, MDGA1 −85741
18 ALGA0040434 7 38.08 0.0013 FGD2, PIM1, TMEM217, TBC1D22B, RNF8, CCDC167, MDGA1 −106358
19 ALGA0109619 13 20.09 0.0013 STT3B, OSBPL10, CMTM6, DYNC1LI1, CMTM7, CMTM 8 within
20 MARC0090396 3 130.65 0.0014 ENSSSCG00000008620 within
21 H3GA0019379 7 37.84 0.0014 PPIL1, PI16, MTCH1, FGD2, PIM1, TMEM217, TBC1D22B, RNF8, ZFAND3, CCDC167, MDGA1 −93575
22 ASGA0068602 15 12.98 0.0014 LRP1B −50827
23 ALGA0070915 13 81.34 0.0014 CHST13, ACPP, DNAJC13, ACAD11, UBA5 within
24 DRGA0015381 15 121.31 0.0015 IN080D,NDUFS1, EEF1B2, GPR1, ZDBF2, ADAM23, FASTKD2, MDH1B, CPO within
25 ASGA0016323 3 124.90 0.0016 APOB 326494
26 MARC0061348 7 38.21 0.0016 TMEM217, TBC1D22B, RNF8, CCDC167, MDGA1 −98887
27 DRGA0007508 7 38.82 0.0016 ZFAND3, BTBD9, GLO1, DNAH8 −73453
28 MARC0084509 4 5.59 0.0016 NA  
29 ALGA0037853 7 0.43 0.0016 CCDC167, FOXQ1, FOXF2, GMDS, 20912
30 ASGA0037952 8 17.25 0.0016 ADGRA3 −312721
31 ALGA0087652 15 140.88 0.0017 NYAP2 −349642
32 ALGA0040570 7 39.63 0.0018 GLO1,DNAH8, GLP1R, KCNK5,KCNK17,KIF6 within
33 ASGA0062412 14 29.48 0.0018 TMEM132B, AACS, BRI3BP, DHX37 within
34 ASGA0032735 7 38.46 0.0018 CCDC167, MDGA1 , ZFAND3 −316254
35 ALGA0040468 7 38.54 0.0018 CCDC167, MDGA1 , ZFAND3 202512
36 ASGA0027748 6 18.83 0.0019 CNOT1, GOT2 −323698
37 ALGA0012631 2 25.98 0.0020 NA  
38 MARC0008120 7 37.81 0.0020 CPNE5,PPIL1,PI16,MTCH1,PTGDS, PIM1, TMEM217, TBC1D22B, RNF8, CCDC167, MDGA1 −69290
39 DRGA0002077 1 254.15 0.0022 RORB 461748
40 BGIS0006392 1 244.49 0.0022 KCNV2 473499
41 ALGA0083738 15 0.26 0.0023 NMI −227794
42 ASGA0032683 7 37.95 0.0023 PPIL1,PI16,MTCH1,PTGDS,PIM1, TMEM217, TBC1D22B, RNF8, CCDC167, MDGA1 −45021
43 ALGA0040427 7 37.97 0.0023 PPIL1,PI16,MTCH1,PTGDS,PIM1, TMEM217, TBC1D22B, RNF8, CCDC167, MDGA1 −62182
44 DIAS0003266 13 38.47 0.0024 GNL3,GLT8D1, SPCS1, NEK4, ITIH3, ITIH4, SFMBT1, PRKCD, TKT, DCP1A within
45 ALGA0106090 15 2.84 0.0024 LYPD6B, KIF5C within
46 ASGA0038720 8 40.37 0.0026 SLAIN2, SLC10A4 , ZAR1 39595
47 SIRI0000172 14 87.58 0.0026 NA  
48 ALGA0076580 14 29.46 0.0027 TMEM132B, AACS, BRI3BP, DHX37 within
49 ALGA0049776 8 138.91 0.0027 MMRN1, SNCA , GPRIN3 −275407
50 ASGA0032655 7 37.40 0.0028 PNPLA1,ETV7,STK38,SRSF3,RAB44, CPNE5, PPIL1,PI16,MTCH1,PTGDS,PIM1, TMEM217,TBC1D22B, RNF8 within
  1. agene with black bold is the nearest gene from the SNP. bPositive value denotes the gene located downstream of the SNP, negative value denotes the gene located upstream of the SNP. cno gene has been identified in this region