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Table 2 Realised accuracy (±SE) of breeding value prediction for fatty acid traits in the subcutaneous adipose and longissimus lumborum musle

From: Genome-wide association and genomic prediction of breeding values for fatty acid composition in subcutaneous adipose and longissimus lumborum muscle of beef cattle

  Subcutaneous adipose Longissimus lumborum
Traita PBLUP GBLUP BayesCπ PBLUP GBLUP BayesCπ
10:0 0.32 ± 0.05 0.37 ± 0.05 0.45 ± 0.05 0.27 ± 0.05 0.37 ± 0.07 0.53 ± 0.06
12:0 0.26 ± 0.04 0.42 ± 0.03 0.58 ± 0.02 0.23 ± 0.03 0.31 ± 0.06 0.53 ± 0.04
13:0 0.06 ± 0.06 0.35 ± 0.04 0.34 ± 0.04 −0.05 ± 0.06 0.31 ± 0.07 0.32 ± 0.07
14:0 0.34 ± 0.04 0.39 ± 0.05 0.61 ± 0.04 0.27 ± 0.04 0.45 ± 0.06 0.73 ± 0.04
15:0 0.38 ± 0.06 0.55 ± 0.06 0.62 ± 0.06 0.26 ± 0.06 0.57 ± 0.08 0.69 ± 0.08
16:0 0.34 ± 0.05 0.28 ± 0.05 0.31 ± 0.05 0.23 ± 0.03 0.36 ± 0.05 0.50 ± 0.05
17:0 0.30 ± 0.05 0.33 ± 0.05 0.34 ± 0.05 0.29 ± 0.05 0.40 ± 0.04 0.46 ± 0.04
18:0 0.15 ± 0.05 0.29 ± 0.06 0.29 ± 0.07 0.24 ± 0.05 0.35 ± 0.05 0.38 ± 0.04
19:0 0.33 ± 0.10 0.40 ± 0.09 0.40 ± 0.10 0.18 ± 0.11 0.18 ± 0.13 0.18 ± 0.13
20:0 0.05 ± 0.06 0.22 ± 0.08 0.21 ± 0.08 0.25 ± 0.05 0.24 ± 0.05 0.24 ± 0.05
22:0 0.24 ± 0.07 0.36 ± 0.05 0.38 ± 0.05 0.17 ± 0.06 0.44 ± 0.07 0.43 ± 0.08
24:0 - - - 0.23 ± 0.06 0.27 ± 0.06 0.28 ± 0.06
SFA 0.29 ± 0.06 0.28 ± 0.07 0.29 ± 0.07 0.14 ± 0.04 0.37 ± 0.06 0.43 ± 0.06
iso14:0 0.16 ± 0.10 0.25 ± 0.10 0.24 ± 0.09 0.30 ± 0.05 0.18 ± 0.08 0.18 ± 0.08
iso15:0 0.20 ± 0.05 0.24 ± 0.07 0.25 ± 0.07 0.17 ± 0.03 0.20 ± 0.07 0.18 ± 0.07
ai15:0 0.21 ± 0.03 0.30 ± 0.04 0.31 ± 0.04 0.18 ± 0.04 0.37 ± 0.05 0.39 ± 0.05
iso16:0 0.20 ± 0.07 0.27 ± 0.06 0.28 ± 0.05 0.15 ± 0.04 0.28 ± 0.06 0.29 ± 0.05
iso17:0 0.18 ± 0.06 0.27 ± 0.05 0.27 ± 0.05 0.25 ± 0.07 0.29 ± 0.06 0.29 ± 0.06
ai17:0 0.14 ± 0.08 0.33 ± 0.08 0.31 ± 0.08 0.15 ± 0.04 0.34 ± 0.04 0.34 ± 0.05
iso18:0 0.12 ± 0.05 0.22 ± 0.05 0.22 ± 0.05 0.21 ± 0.05 0.33 ± 0.06 0.37 ± 0.06
BFA 0.20 ± 0.06 0.31 ± 0.05 0.31 ± 0.05 0.17 ± 0.05 0.32 ± 0.04 0.32 ± 0.04
SFA + BFA 0.30 ± 0.06 0.29 ± 0.07 0.31 ± 0.07 0.14 ± 0.04 0.36 ± 0.06 0.42 ± 0.06
9c-14:1 0.19 ± 0.06 0.31 ± 0.04 0.43 ± 0.04 0.27 ± 0.06 0.34 ± 0.04 0.55 ± 0.03
9c-15:1 0.16 ± 0.06 0.23 ± 0.07 0.23 ± 0.08 0.24 ± 0.11 0.36 ± 0.10 0.37 ± 0.10
7c-16:1 0.19 ± 0.05 0.18 ± 0.07 0.20 ± 0.07 0.16 ± 0.07 0.22 ± 0.05 0.24 ± 0.05
9c-16:1 0.13 ± 0.04 0.25 ± 0.06 0.26 ± 0.07 0.29 ± 0.03 0.37 ± 0.03 0.49 ± 0.02
11 t-16:1 0.14 ± 0.08 0.33 ± 0.05 0.33 ± 0.05 0.08 ± 0.08 0.12 ± 0.09 0.13 ± 0.10
12c-16:1 0.22 ± 0.05 0.34 ± 0.03 0.43 ± 0.03 0.25 ± 0.05 0.32 ± 0.04 0.55 ± 0.02
7c-17:1 - - - −0.02 ± 0.15 0.33 ± 0.24 0.32 ± 0.21
9c-17:1 0.34 ± 0.07 0.48 ± 0.06 0.48 ± 0.05 0.37 ± 0.08 0.40 ± 0.08 0.40 ± 0.08
9c-18:1 0.35 ± 0.10 0.30 ± 0.10 0.29 ± 0.10 0.14 ± 0.03 0.27 ± 0.06 0.37 ± 0.05
11c-18:1 0.57 ± 0.18 0.57 ± 0.18 0.55 ± 0.18 0.29 ± 0.02 0.44 ± 0.07 0.45 ± 0.07
12c-18:1 0.00 ± 0.09 0.11 ± 0.10 0.11 ± 0.09 0.11 ± 0.10 0.18 ± 0.10 0.19 ± 0.10
13c-18:1 0.19 ± 0.05 0.36 ± 0.04 0.41 ± 0.04 0.21 ± 0.03 0.36 ± 0.05 0.51 ± 0.04
14c-18:1 0.10 ± 0.09 0.28 ± 0.11 0.28 ± 0.11 0.15 ± 0.09 0.17 ± 0.07 0.17 ± 0.07
15c-18:1 0.20 ± 0.04 0.30 ± 0.04 0.31 ± 0.04 0.19 ± 0.05 0.26 ± 0.05 0.25 ± 0.06
6 t + 8 t-18:1 0.30 ± 0.06 0.35 ± 0.04 0.34 ± 0.04 0.20 ± 0.07 0.29 ± 0.04 0.30 ± 0.04
9 t-18:1 0.30 ± 0.09 0.33 ± 0.06 0.33 ± 0.06 0.26 ± 0.08 0.31 ± 0.04 0.32 ± 0.04
10 t-18:1 0.28 ± 0.03 0.42 ± 0.03 0.43 ± 0.03 0.26 ± 0.03 0.41 ± 0.03 0.42 ± 0.03
11 t-18:1 0.35 ± 0.08 0.43 ± 0.09 0.42 ± 0.09 0.29 ± 0.04 0.38 ± 0.04 0.35 ± 0.05
12 t-18:1 - - - 0.05 ± 0.07 0.27 ± 0.10 0.26 ± 0.10
15 t-18:1 - - - −0.26 ± 0.15 −0.05 ± 0.16 −0.01 ± 0.16
16 t-18:1 0.41 ± 0.07 0.65 ± 0.13 0.64 ± 0.13 0.33 ± 0.05 0.47 ± 0.07 0.48 ± 0.07
sumtrans18:1 0.22 ± 0.03 0.35 ± 0.04 0.35 ± 0.03 0.25 ± 0.02 0.36 ± 0.03 0.37 ± 0.03
9c-20:1 0.33 ± 0.06 0.45 ± 0.07 0.45 ± 0.07 −0.03 ± 0.10 0.02 ± 0.09 0.00 ± 0.09
11c-20:1 0.20 ± 0.05 0.27 ± 0.04 0.30 ± 0.04 0.35 ± 0.06 0.37 ± 0.05 0.47 ± 0.04
MUFA 0.29 ± 0.07 0.29 ± 0.08 0.30 ± 0.08 0.11 ± 0.03 0.25 ± 0.07 0.31 ± 0.06
9c,13 t + 8 t,12c-18:2 0.22 ± 0.05 0.34 ± 0.07 0.33 ± 0.07 0.14 ± 0.06 0.36 ± 0.08 0.36 ± 0.08
9c,15c-18:2 0.18 ± 0.07 0.33 ± 0.05 0.35 ± 0.05 0.22 ± 0.04 0.38 ± 0.06 0.45 ± 0.06
8 t,13c-18:2 0.23 ± 0.05 0.38 ± 0.06 0.37 ± 0.06 0.02 ± 0.10 0.30 ± 0.04 0.31 ± 0.04
11 t,15c-18:2 0.25 ± 0.05 0.31 ± 0.06 0.32 ± 0.06 0.25 ± 0.03 0.34 ± 0.04 0.36 ± 0.04
9c,11 t + 9 t,11c-18:2 0.05 ± 0.08 0.25 ± 0.07 0.24 ± 0.07 0.26 ± 0.05 0.26 ± 0.07 0.25 ± 0.06
7 t,9c-18:2 0.58 ± 0.14 0.63 ± 0.12 0.64 ± 0.13 0.43 ± 0.22 0.31 ± 0.25 0.28 ± 0.26
12 t,14 t-18:2 0.06 ± 0.28 0.44 ± 0.33 0.41 ± 0.34 0.25 ± 0.19 0.50 ± 0.23 0.48 ± 0.22
11 t,13 t-18:2 0.48 ± 0.16 0.47 ± 0.11 0.46 ± 0.12 0.11 ± 0.10 0.06 ± 0.09 0.06 ± 0.09
10 t,12 t-18:2 - - - 0.09 ± 0.08 0.08 ± 0.11 0.08 ± 0.11
9 t,11 t-18:2 - - - 0.11 ± 0.10 0.01 ± 0.08 0.02 ± 0.08
8 t,10 t-18:2 0.35 ± 0.14 0.28 ± 0.14 0.28 ± 0.13 0.24 ± 0.13 −0.01 ± 0.10 0.05 ± 0.11
7 t,9 t-18:2 0.41 ± 0.44 0.10 ± 0.47 0.04 ± 0.48 - - -
12 t,14c + 12c,14 t −18:2 −0.01 ± 0.26 0.32 ± 0.25 0.34 ± 0.24 0.06 ± 0.09 0.04 ± 0.07 0.04 ± 0.07
11 t,13c + 11c,13 t −18:2 0.54 ± 0.06 0.56 ± 0.08 0.54 ± 0.08 0.16 ± 0.10 0.29 ± 0.06 0.30 ± 0.06
10 t,12c-18:2 0.44 ± 0.09 0.52 ± 0.07 0.52 ± 0.08 0.04 ± 0.12 0.21 ± 0.14 0.22 ± 0.14
8 t,10c-18:2 0.33 ± 0.17 0.32 ± 0.14 0.31 ± 0.14 0.27 ± 0.08 0.15 ± 0.07 0.13 ± 0.07
Total CLA 0.25 ± 0.09 0.37 ± 0.09 0.36 ± 0.10 0.12 ± 0.06 0.06 ± 0.06 0.06 ± 0.06
18:2n-6 0.21 ± 0.02 0.35 ± 0.04 0.36 ± 0.04 0.15 ± 0.05 0.29 ± 0.04 0.32 ± 0.04
18:3n-3 0.27 ± 0.04 0.38 ± 0.04 0.38 ± 0.04 0.28 ± 0.06 0.33 ± 0.04 0.34 ± 0.04
18:3n-6 0.10 ± 0.11 0.09 ± 0.09 0.11 ± 0.09 0.20 ± 0.05 0.36 ± 0.05 0.41 ± 0.04
20:2n-6 0.20 ± 0.07 0.06 ± 0.05 0.06 ± 0.06 0.07 ± 0.11 0.10 ± 0.07 0.11 ± 0.07
20:3n-6 0.10 ± 0.11 0.24 ± 0.11 0.22 ± 0.11 0.14 ± 0.03 0.32 ± 0.04 0.34 ± 0.05
20:3n-9 0.20 ± 0.16 −0.03 ± 0.11 −0.05 ± 0.13 0.12 ± 0.04 0.33 ± 0.07 0.33 ± 0.07
20:4n-6 −0.10 ± 0.04 0.10 ± 0.09 0.09 ± 0.08 0.09 ± 0.03 0.29 ± 0.06 0.31 ± 0.05
20:5n-3 - - - 0.32 ± 0.06 0.10 ± 0.11 0.09 ± 0.11
22:4n-6 0.10 ± 0.04 0.19 ± 0.08 0.19 ± 0.08 0.15 ± 0.06 0.38 ± 0.08 0.40 ± 0.08
22:5n-3 0.04 ± 0.10 0.14 ± 0.08 0.14 ± 0.08 0.15 ± 0.04 0.39 ± 0.07 0.39 ± 0.07
22:6n-3 - - - 0.00 ± 0.05 0.10 ± 0.08 0.10 ± 0.07
PUFA 0.21 ± 0.02 0.35 ± 0.04 0.36 ± 0.04 0.14 ± 0.04 0.30 ± 0.04 0.33 ± 0.04
n-3 0.27 ± 0.04 0.37 ± 0.05 0.38 ± 0.04 0.22 ± 0.04 0.40 ± 0.05 0.40 ± 0.05
n-6 0.20 ± 0.02 0.35 ± 0.04 0.36 ± 0.04 0.14 ± 0.04 0.29 ± 0.04 0.32 ± 0.04
n-6/n-3 - - - 0.11 ± 0.04 0.16 ± 0.04 0.14 ± 0.04
P/S 0.19 ± 0.03 0.33 ± 0.04 0.34 ± 0.04 0.14 ± 0.03 0.38 ± 0.04 0.39 ± 0.03
P/(S + B) 0.19 ± 0.03 0.33 ± 0.04 0.34 ± 0.04 0.14 ± 0.09 0.38 ± 0.04 0.39 ± 0.04
HI 0.31 ± 0.05 0.30 ± 0.05 0.38 ± 0.05 0.22 ± 0.05 0.41 ± 0.06 0.59 ± 0.06
  1. aThe concentrations of fatty acids were expressed as a percentage of fatty acid methyl esters (FAME) quantified. c = cis, t = trans. SFA = 10:0 + 12:0 + 13:0 + 14:0 + 15:0 + 16:0 + 17:0 + 18:0 + 19:0 + 20:0 + 22:0 + 24:0; BFA = iso14:0 + iso15:0 + ai15:0 + iso16:0 + iso17:0 + ai17:0 + iso18:0; SFA + BFA: sum of SFA and BFA; sumtrans18:1 = 6 t/8 t-18:1 + 9 t-18:1 + 10 t-18:1 + 11 t-18:1 + 12 t-18:1 + 15 t-18:1 + 16 t-18:1; MUFA = 9c-14:1 + 9c-15:1 + 7c-16:1 + 9c-16:1 + 11 t-16:1 + 12c-16:1 + 7c-17:1 + 9c-17:1 + 9c-18:1 + 11c-18:1 + 12c-18:1 + 13c-18:1 + 14c-18:1 + 15c-18:1 + 9c-20:1 + 11c-20 + 6 t/8 t-18:1 + 9 t-18:1 + 10 t-18:1 + 11 t-18:1 + 12 t-18:1 + 15 t-18:1 + 16 t-18:1; Total CLA = 9c,11 t + 9 t,11c-18:2 + 6 t,8 t-18:2 + 7 t,9c-18:2 + 12 t,(14 t-18:2 + 11 t,13 t)-18:2 + 10 t,12 t-18:2 + 9 t,11 t-18:2 + 8 t,10 t-18:2 + 7 t,9 t-18:2 + (12 t,14c + 12c,14 t) -18:2 + (11 t,13c + 11c,13 t)-18:2 + 10 t,12c-18:2 + 8 t,10c-18:2; PUFA = 18:2n-6 + 18:3n-6 + 18:3n-3 + 20:2n-6 + 20:3n-9 + 20:3n-6 + 20:4n-6 + 22:4n-6 + 22:5n-3+ 22:6n-3; n-3 = 18:3n-3 + 20:5n-3 + 22:5n-3 + 22:6n-3; n-6 = 18:2n-6 + 18:3n-6 + 20:2n-6 + 20:3n-6 + 20:4n-6 + 22:4n-6; n-6/n-3: ratio between n-6 and n-3; P/S = PUFA/SFA; P/(S + B) = PUFA/(SFA + BFA); HI = (MUFA + PUFA) / (4 × 14:0 + 16:0). ‘-’ = not calculated due to a zero heritability
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