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Fig. 2 | BMC Genetics

Fig. 2

From: Impact of QTL minor allele frequency on genomic evaluation using real genotype data and simulated phenotypes in Japanese Black cattle

Fig. 2

Proportion of linkage disequilibrium value (r2) between QTLs and adjacent SNPs. The plot on the right upper corner is the zoomed area of the bigger plot. The x-axis indicates the r2 value between QTLs and SNPs, and the y-axis represents the proportion of QTLs in each minor allele frequency (MAF) category (All, Low, and High). The r2 values between QTLs and both adjacent SNPs were calculated, and then the maximum value of r2 between two QTL-SNP intervals was chosen to plot in each QTL. The parameters used were the same as those under scenario 1

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BMC Genomic Data

ISSN: 2730-6844

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