Genome-wide association study in Chinese Holstein cows reveal two candidate genes for somatic cell score as an indicator for mastitis susceptibility

Table 2 Genome-wide significant SNPs with genome annotations

SNP name	Chr.	Nearest genes^a			P-values
SNP name	Chr.	Name	Distance(bp)	Full name	P-values
ARS-BFGL-NGS-32524	0^b	NA	NA	NA	4.79E-07
ARS-BFGL-NGS-18858	0^b	NA	NA	NA	7.00E-07
BFGL-NGS-114657	0^b	NA	NA	NA	6.61E-07
ARS-BFGL-NGS-3540	11	C1D	359533	C1D nuclear receptor corepressor	6.99E-07
Hapmap39693-BTA-85506	11	MEMO1	51033	mediator of cell motility 1	1.09E-06
ARS-BFGL-NGS-100480	14	TRAPPC9	within	trafficking protein particle complex 9	1.24E-10
ARS-BFGL-NGS-4939	14	ARHGAP39	258178	Rho GTPase activating protein 39	9.97E-10
ARS-BFGL-NGS-107379	14	ARHGAP39	460	Rho GTPase activating protein 39	1.63E-09
ARS-BFGL-NGS-57820	14	ARHGAP39	50773	Rho GTPase activating protein 39	1.97E-09
ARS-BFGL-NGS-56327	14	TRAPPC9	within	trafficking protein particle complex 9	3.29E-08
UA-IFASA-5306	14	TRAPPC9	within	trafficking protein particle complex 9	3.64E-08
UA-IFASA-9288	14	PTK2	within	PTK2 protein tyrosine kinase 2	8.29E-08
Hapmap56639-rs29021780	X	GRIA3	within	glutamate receptor, ionotrophic, AMPA 3	1.34E-07

NA not available
^aDerived from UCSC Genome Bioinformatics (http://genome.ucsc.edu/cgi-bin/hgBlat?command=start)
^bThese SNPs are not assigned to any chromosomes and noted as “0”

ISSN: 2730-6844