Table 1 Chromosome-wide significant SNPs for SCS EBVs
SNP name | Chr. | Position(bp) | Nearest genesa | Distance(bp) | P-values |
|---|---|---|---|---|---|
ARS-BFGL-NGS-32524 | 0b | NA | NA | NA | 4.79E-07 |
ARS-BFGL-NGS-18858 | 0b | NA | NA | NA | 7.00E-07 |
BFGL-NGS-114657 | 0b | NA | NA | NA | 6.61E-07 |
ARS-BFGL-NGS-91137 | 0b | NA | NA | NA | 1.48E-05 |
ARS-BFGL-NGS-60730 | 0b | NA | NA | NA | 3.41E-05 |
ARS-BFGL-NGS-103637 | 1 | 59166287 | SIDT1 | within | 4.13E-06 |
ARS-BFGL-NGS-2950 | 1 | 84528381 | MAGEF1 | 152817 | 1.71E-05 |
Hapmap42708-BTA-86534 | 3 | 50852627 | RWDD3 | 596180 | 1.15E-06 |
ARS-BFGL-NGS-55261 | 3 | 2281390 | ILDR2 | 212007 | 1.91E-05 |
Hapmap32072-BTA-142491 | 4 | 106961853 | TBXAS1 | 16314 | 1.13E-05 |
Hapmap51299-BTA-73473 | 5 | 47059558 | RAB3A | 86426 | 7.44E-06 |
ARS-BFGL-NGS-104108 | 5 | 71073538 | IGF1 | 52675 | 1.48E-05 |
BTB-01491979 | 8 | 107025584 | LOC534155 | 130161 | 2.22E-05 |
BTB-00391421 | 9 | 50410127 | GRIK2 | within | 1.08E-05 |
Hapmap51481-BTA-67522 | 9 | 49607152 | GRIK2 | 375591 | 1.51E-05 |
BTB-00391456 | 9 | 50434277 | GRIK2 | within | 2.49E-05 |
ARS-BFGL-NGS-3540 | 11 | 68044963 | C1D | 359533 | 6.99E-07 |
Hapmap39693-BTA-85506 | 11 | 15115923 | MEMO1 | 51033 | 1.09E-06 |
ARS-BFGL-BAC-14940 | 11 | 67828555 | ETAA1 | 173499 | 1.42E-06 |
Hapmap31821-BTA-156670 | 13 | 4956832 | NA | NA | 1.14E-05 |
ARS-BFGL-NGS-100480 | 14 | 2607583 | TRAPPC9 | within | 1.24E-10 |
ARS-BFGL-NGS-4939 | 14 | 443937 | ARHGAP39 | 258178 | 9.97E-10 |
ARS-BFGL-NGS-107379 | 14 | 679600 | ARHGAP39 | 460 | 1.63E-09 |
ARS-BFGL-NGS-57820 | 14 | 236532 | ARHGAP39 | 50773 | 1.97E-09 |
ARS-BFGL-NGS-56327 | 14 | 2580414 | TRAPPC9 | within | 3.29E-08 |
UA-IFASA-5306 | 14 | 2711615 | TRAPPC9 | within | 3.64E-08 |
UA-IFASA-9288 | 14 | 2201870 | PTK2 | within | 8.29E-08 |
ARS-BFGL-NGS-18365 | 14 | 741867 | MAPK15 | 111034 | 2.77E-06 |
BFGL-NGS-113575 | 14 | 2484499 | TRAPPC9 | within | 1.08E-05 |
BFGL-NGS-111902 | 14 | 65409003 | TSPYL5 | 370903 | 1.86E-05 |
ARS-BFGL-NGS-104701 | 16 | 56834152 | GLRX | 191565 | 2.73E-05 |
ARS-BFGL-BAC-33744 | 19 | 34229778 | NCOR1 | within | 4.14E-05 |
ARS-BFGL-NGS-44441 | 20 | 13114376 | CD180 | 31009 | 3.59E-06 |
ARS-BFGL-NGS-106084 | 21 | 57855394 | ITPK1 | 180441 | 5.48E-06 |
ARS-BFGL-NGS-61681 | 21 | 30197672 | CHRNA7 | 499598 | 5.65E-06 |
ARS-BFGL-NGS-41216 | 21 | 25613731 | BCL2A1 | 141178 | 1.12E-05 |
ARS-BFGL-NGS-7344 | 21 | 42702373 | G2E3 | 521371 | 1.54E-05 |
ARS-BFGL-NGS-39846 | 27 | 36421058 | PLEKHA2 | 12209 | 5.81E-06 |
ARS-BFGL-NGS-71055 | 27 | 37589834 | IDO1 | 198717 | 8.77E-06 |
ARS-BFGL-NGS-29650 | 27 | 36946859 | IDO1 | 431343 | 1.55E-05 |
ARS-BFGL-NGS-108861 | 27 | 37445592 | IDO1 | 54475 | 4.96E-05 |
UA-IFASA-6255 | 28 | 41464821 | BMPR1A | within | 3.80E-05 |
BTB-01016631 | 29 | 28085086 | SAA2 | 355019 | 5.76E-06 |
ARS-BFGL-NGS-12475 | 29 | 21777960 | LUZP2 | 47926 | 9.44E-06 |
BTB-01337464 | 29 | 29072341 | NA | NA | 3.04E-05 |
Hapmap56639-rs29021780 | X | 2460976 | GRIA3 | within | 1.34E-07 |
Hapmap57012-rs29019338 | X | 12135331 | F9 | 821885 | 2.85E-06 |
ARS-BFGL-NGS-94205 | X | 2348904 | GRIA3 | within | 8.47E-05 |