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Table 7 Correlation between allelic R2 measure from Beagle and true imputation reliability on GGA1 for different MAF classes and different reference sizes in G0, G1 and G2 (48K to 60K scenario)

From: Accuracy of imputation using the most common sires as reference population in layer chickens

 

Ref22

Ref62

MAF1class

G02

G13

G24

G0

G1

G2

0.008–0.1

0.70

0.60

0.45

0.67

0.71

0.51

0.1–0.2

0.67

0.73

0.52

0.72

0.72

0.63

0.2–0.3

0.75

0.72

0.64

0.74

0.73

0.71

0.3–0.4

0.64

0.69

0.60

0.79

0.76

0.68

0.4–0.5

0.74

0.72

0.71

0.85

0.81

0.82

  1. 1 Minor allele frequency
  2. 2 First generation of genomic selection experiment
  3. 3 Offspring of G0
  4. 4 Offspring of G1
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BMC Genomic Data

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