Reference | Software | HELLI > =0.45 (%) | SEN > =0.45 (%) | CIG (%) | Rsq/Info mean | Rsq/Info > =0.8 (%) |
---|---|---|---|---|---|---|
CEU | MaCH | −0.907 | −0.911 | −0.902 | −0.959 | −0.930 |
MaCH_minimac | −0.870 | −0.871 | −0.868 | −0.914 | −0.865 | |
IMPUTE2 | −0.877 | −0.888 | −0.876 | −0.943 | −0.898 | |
YRI | MaCH | −0.962 | −0.969 | −0.966 | −0.975 | −0.849 |
MaCH_minimac | −0.950 | −0.961 | −0.953 | −0.971 | −0.620 | |
IMPUTE2 | −0.953 | −0.966 | −0.956 | −0.969 | −0.507 | |
CHB. JPT | MaCH | −0.907 | −0.905 | −0.910 | −0.767 | −0.739 |
MaCH_minimac | −0.892 | −0.893 | −0.896 | −0.767 | −0.785 | |
IMPUTE2 | −0.853 | −0.852 | −0.856 | −0.784 | −0.806 | |
MEX | MaCH | −0.917 | −0.915 | −0.914 | −0.946 | −0.923 |
MaCH_minimac | −0.898 | −0.892 | −0.898 | −0.908 | −0.882 | |
IMPUTE2 | −0.898 | −0.902 | −0.901 | −0.932 | −0.904 |