|
Gene
|
Gen location
|
Allele
|
Amino acid (AA)
|
Change of AA class
|
AA position
|
SNP IDa
|
|---|
|
RXRA
|
Exon 1
|
[C/T]
|
Pro (P)
|
Ser (S)
|
8
|
rs209839910
|
|
Intron 1
|
[A/G]
|
------
|
------
|
------
|
g.105,985,004
|
|
Intron 1
|
[G/T]
|
------
|
------
|
------
|
g.105,985,027
|
|
Intron 1
|
[T/G]
|
------
|
------
|
------
|
g.105,985,044
|
|
Intron 1
|
[G/A]
|
------
|
------
|
------
|
g.105,985,130
|
|
Intron 1
|
[C/T]
|
------
|
------
|
------
|
g.105,986,006
|
|
Exon 2
|
[A/G]
|
Ser (S)
|
No change
|
136
|
g.105,986,149
|
|
Exon 3
|
[G/T]
|
Val (V)
|
No change
|
148
|
g.105,986,715
|
|
Exon 3
|
[A/C]
|
Asn (N)
|
Thr (T)
|
162
|
rs137184653
|
|
Exon 4
|
[C/T]
|
Pro (P)
|
Leu (L)
|
198
|
g.105,989,022
|
|
Exon 4
|
[C/T]
|
Thr (T)
|
No change
|
217
|
g.105,989,080
|
|
Intron 4
|
[G/A]
|
------
|
------
|
------
|
g.105,989,114
|
|
Intron 4
|
[A/G]
|
------
|
------
|
------
|
g.105,989,179
|
|
Intron 4
|
[T/C]
|
------
|
------
|
------
|
g.105,989,219
|
|
Intron 4
|
[T/C]
|
------
|
------
|
------
|
g.105,989,236
|
|
Intron 4
|
[G/A]
|
------
|
------
|
------
|
g.105,989,283
|
|
Exon 5
|
[G/A]
|
Arg (R)
|
Lys (L)
|
245
|
g.105,989,790
|
|
Intron 5
|
[G/A]
|
------
|
------
|
------
|
g.105,989,983
|
|
Intron 5
|
[A/C]
|
------
|
------
|
------
|
g.105,990,023
|
|
Exon 7
|
[G/A]
|
Pro (P)
|
No change
|
357
|
g. 105,990,568
|
|
Exon 8
|
[T/C]
|
Arg (R)
|
No change
|
370
|
rs136289117
|
|
Intron 9
|
[G/A]
|
------
|
------
|
------
|
g.106,004,142
|
|
Intron 9
|
[A/C]
|
------
|
------
|
------
|
g.106,004,147
|
|
Intron 9
|
[G/A]
|
------
|
------
|
------
|
g.106,004,180
|
|
Intron 9
|
[A/G]
|
------
|
------
|
------
|
g.106,004,184
|
|
Intron 10
|
[T/C]
|
------
|
------
|
------
|
g.106,004,449
|
|
Intron 10
|
[C/A]
|
------
|
------
|
------
|
g.106,004,518
|
|
Intron 12
|
[G/A]
|
------
|
------
|
------
|
g.106,009,252
|
|
Intron 12
|
[G/A]
|
------
|
------
|
------
|
g.106,009,293
|
|
Intron 12
|
[C/T]
|
------
|
------
|
------
|
g.106,011,088
|
|
Intron 12
|
[C/G]
|
------
|
------
|
------
|
g.106,011,096
|
|
Intron 12
|
[T/G]
|
------
|
------
|
------
|
g.106,011,126
|
|
Exon 13
|
[C/T]
|
Ile (I)
|
No change
|
667
|
g.106,011,238
|
|
Exon 13
|
[C/T]
|
Pro (P)
|
No change
|
672
|
g.106,011,253
|
|
Intron 13
|
[C/T]
|
------
|
------
|
------
|
g.106,011,448
|
|
Intron 13
|
[C/T]
|
------
|
------
|
------
|
g.106,011,466
|
|
Intron 13
|
[G/A]
|
------
|
------
|
------
|
g.106,011,539
|
|
IGF1R
|
Exon 1
|
[T/C]
|
Ser (S)
|
No change
|
4
|
rs379619394
|
|
Exon 1
|
[A/G]
|
Gly (G)
|
Arg (R)
|
6
|
rs385718425
|
|
Exon 1
|
[C/A]
|
Leu (L)
|
Ile (I)
|
25
|
rs209595810
|
|
Exon 1
|
[T/G]
|
Ile (I)
|
Met (M)
|
28
|
rs380419725
|
|
Exon 1
|
[T/G]
|
Ser (S)
|
Ile (I)
|
29
|
rs378266791
|
|
Exon 2
|
[T/C]
|
Cys (C)
|
No change
|
33
|
rs134868883
|
|
Exon 7
|
[T/C]
|
Asp (D)
|
No change
|
491
|
rs41961336
|
|
Exon 7
|
[A/C]
|
Thr (T)
|
Pro (P)
|
496
|
rs135514117
|
|
Exon 7
|
[C/T]
|
Ser (S)
|
Pro (P)
|
497
|
rs132825686
|
|
Exon 8
|
[C/T]
|
Ala (A)
|
No change
|
583
|
rs385548776
|
|
Exon 10
|
[C/T]
|
Asp (D)
|
No change
|
675
|
rs210778604
|
|
Exon 11
|
[C/T]
|
Thr (T)
|
No change
|
773
|
rs209736678
|
|
Exon 12
|
[G/A]
|
Pro (P)
|
No change
|
837
|
rs41640706
|
|
Exon 13
|
[C/T]
|
Ser (S)
|
No change
|
881
|
rs133373507
|
|
Exon 16
|
[C/T]
|
Tyr (Y)
|
No change
|
987
|
rs208140993
|
|
Exon 19
|
[G/A]
|
Lys (K)
|
No change
|
1168
|
rs380900001
|
|
Exon 21
|
[G/A]
|
Ser (S)
|
No change
|
1308
|
rs384753755
|
|
TCF15
|
Exon 1
|
[C/G]
|
Asp (D)
|
Glu (E)
|
32
|
rs134079367
|
|
Exon 1
|
[T/G]
|
Ser (S)
|
Ala (A)
|
37
|
rs137532487
|
|
Exon 1
|
[A/C]
|
Gln (Q)
|
Pro (P)
|
73
|
rs134702498
|
|
Intron 1
|
[G/A]
|
------
|
------
|
------
|
g.60,997,442
|
|
INS
|
Exon 1
|
[G/A]
|
Ala (A)
|
Thr (T)
|
24
|
rs383254521
|
|
Intron 1
|
G/A
|
------
|
------
|
------
|
g.50,036,892
|
|
Intron 1
|
C/T
|
------
|
------
|
------
|
g.50,036,987
|
|
Intron 1
|
A/G
|
------
|
------
|
------
|
g.50,037,033
|
|
Exon 2
|
[T/G]
|
Val (V)
|
Gly (G)
|
63
|
rs135743222
|
|
Exon 2
|
[C/T]
|
Pro (P)
|
Leu (L)
|
72
|
rs109490717
|
|
Exon 2
|
[C/T]
|
Pro (P)
|
Leu (L)
|
80
|
rs109229312
|
|
EGFR
|
Exon 1
|
[T/C]
|
Lys (K)
|
Arg (R)
|
29
|
rs136877925
|
|
Exon 4
|
[T/C]
|
Asn (N)
|
Asp (D)
|
182
|
rs135955902
|
|
Exon 6
|
[T/G]
|
His (H)
|
Pro (P)
|
233
|
rs137416447
|
|
Exon 7
|
[A/G]
|
Asn (N)
|
No change
|
280
|
rs209095847
|
|
Exon 8
|
[C/T]
|
Val (V)
|
Ile (I)
|
318
|
rs211658253
|
|
Exon 18
|
[T/C]
|
Ser (S)
|
No change
|
720
|
rs210170316
|
|
Exon 21
|
[T/C]
|
Ala (A)
|
No change
|
839
|
rs110045273
|
|
Exon 25
|
[G/A]
|
Arg (R)
|
No change
|
999
|
rs379217506
|
|
Exon 28
|
[G/A]
|
Val (V)
|
No change
|
1107
|
rs385131275
|
|
USF1
|
Intron 2
|
A/G
|
------
|
------
|
------
|
g.8,458,558
|
|
Intron 3
|
G/A
|
------
|
------
|
------
|
g.8,458,837
|
|
Intron 6
|
A/G
|
------
|
------
|
------
|
g.8,459,971
|
|
Exon 8
|
C/T
|
Ser (S)
|
No change
|
236
|
g.8,460,354
|
|
Intron 9
|
C/T
|
------
|
------
|
------
|
g.8,460,878
|
-
aBased on GenBank Bos taurus genomic sequence: 507554 (RXRA), IGF1R (281848), TCF15 (518491), 280829 (INS), 407239 (USF1), and 407217 (EGFR)
