Isotype
|
Total read count
|
Main tRF region
|
---|
Mitochondrial tRF
| | |
Ser (GCU)
|
3,678
|
5’ half
|
Val (UAC)
|
1,784
|
3’ end
|
Lys (CUU)
|
1,606
|
5’ half
|
Thr (UGU)
|
1,547
|
5’ end and 3’ half
|
Ile (GAU)
|
795
|
5’ end and 3’ half
|
Phe (GAA)
|
713
|
3’ end
|
Gly (UCC)
|
583
|
AC stem-loop
|
Asn (GUU)
|
403
|
3’ end and AC stem-loop
|
Met (CAU)
|
316
|
AC stem-loop
|
Tyr (GUA)
|
294
|
5’ half and AC stem-loop
|
Asp (GUC)
|
218
|
3’ end and AC stem-loop
|
Cys (GCA)
|
144
|
3’ half
|
Pro (UGG)
|
67
|
5’ and 3’ end
|
Gln (UUG)
|
56
|
5’ half and AC stem-loop
|
Leu (UAA)
|
30
|
3’ end
|
Ala (UCG)
|
6
|
3’ end
|
Nuclear tRF
| | |
Gly (GCC)
|
3,674,244 a,b
|
5’ half
|
Gly (CCC)
|
749,207
|
5’ half
|
Glu (CUC)
|
280,322 c
|
5’ half
|
Lys (CUU)
|
102,190
|
5’ half
|
Asp (GUC)
|
88,065
|
5’ half
|
Glu (UUC)
|
62,011 c
|
5’ end
|
His (GUG)
|
29,698
|
5’ end
|
Thr (UGU)
|
10,286
|
3’ end
|
Gly (UCC)
|
9,046 b
|
5’ half
|
SeC (UCA)
|
6,911
|
5’ half
|
Pro (CGG)
|
6,616 b,c
|
5’ half
|
Pro (UGG)
|
5,842 b,c
|
5’ half
|
Cys (GCA)
|
3,808
|
5’ half
|
Gln (CUG)
|
3,654 b,c
|
AC stem-loop
|
Ala (CGC)
|
3,413
|
5’ half
|
Gln (UUG)
|
2,478 b,c
|
5’ half
|
-
a All reads that could be mapped to both tRNA and other nuclear genomic regions were removed
-
b All reads that could be mapped to tRNA genes containing polymorphic site(s) were removed
-
c All reads that could be mapped to tRNA genes with several different anticodons were removed