Table 5 Percentage of genotypes on human chromosome 22 correctly called from various sequence read depths and error rates or imputed correctly from HD
From: Fast imputation using medium or low-coverage sequence data
Sequence read depth | Error rate (%) | |||||||
|---|---|---|---|---|---|---|---|---|
0 | 1 | 4 | 16 | |||||
Sequence | HD | Sequence | HD | Sequence | HD | Sequence | HD | |
16× | 100.0 | 97.4 | 99.9 | 97.4 | 99.8 | 97.4 | 98.9 | 97.3 |
8× | 99.6 | 97.3 | 99.4 | 97.3 | 99.0 | 97.2 | 98.1 | 97.2 |
4× | 98.6 | 96.8 | 98.3 | 96.9 | 97.9 | 96.9 | 96.9 | 96.7 |
2× | 97.0 | 96.2 | 96.9 | 96.3 | 96.4 | 96.0 | 95.1 | 95.5 |
1× | 95.1 | 95.2 | 95.1 | 95.1 | 94.5 | 94.6 | 93.2 | 93.8 |