Table 3 Percentages of genotypes called correctly by findhap for simulated sequenced animals
From: Fast imputation using medium or low-coverage sequence data
Error rate (%) | Population size | Sequence read depth | ||||
|---|---|---|---|---|---|---|
1× | 2× | 4× | 8× | 16× | ||
0 | 500 | 92.1 | 94.9 | 97.7 | 99.5 | 100.0 |
1000 | 94.6 | 96.4 | 98.3 | 99.7 | 100.0 | |
1 | 500 | 91.2 | 94.1 | 97.0 | 99.2 | 99.9 |
1000 | 93.8 | 95.9 | 97.8 | 99.5 | 99.9 | |
4 | 500 | 90.5 | 93.1 | 96.1 | 98.4 | 99.7 |
1000 | 93.6 | 95.2 | 97.2 | 98.9 | 99.8 | |
16 | 500 | 87.3 | 89.2 | 91.6 | 95.2 | 98.1 |
1000 | 91.3 | 92.1 | 93.6 | 96.5 | 98.8 | |