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Table 2 Accuracy and percentage correct for calling genotypes of sequenced animals and for imputation for 250 young animals with simulated bovine data

From: Fast imputation using medium or low-coverage sequence data

Sequenced population Software Genotype calling (1 % error rate) Imputation from HD to sequence
Size Coverage Percentage correct Correlation Percentage correct Correlation
250 Findhap 98.7 0.981 95.0 0.926
Beagle 99.0 0.984 97.1 0.956
500 Findhap 99.1 0.988 98.1 0.974
Beagle 99.6 0.994 99.4 0.991
250 Findhap 95.8 0.939 93.1 0.897
Beagle 95.0 0.918 78.2 0.582
250 Findhap 91.3 0.879 89.2 0.837
Beagle 79.5 0.602 63.5 0.100