Table 1 Computing times with 10 processors for different populations and SNV densities using one simulated bovine chromosome
From: Fast imputation using medium or low-coverage sequence data
Software | Reference data | Array genotypes | Computing time (minutes) | ||
|---|---|---|---|---|---|
Population size | SNVs | Population size | SNVs | ||
Beagle | 250 | 1,000,000 | 250 | 20,000 | 4258 |
findhap | 250 | 1,000,000 | 250 | 20,000 | 11 |
500 | 1,000,000 | 250 | 20,000 | 19 | |
1000 | 1,000,000 | 250 | 20,000 | 37 | |
10,000 | 1,000,000 | 250 | 20,000 | 420 | |
10,000 | 20,000 | 250 | 2000 | 17 | |
10,000 | 2000 | 250 | 200 | 4 | |
884 | 394,274 | 218 | 39,440 | 17 | |