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Table 3 P-value thresholds, number of significant pairwise additive × additive interactions and calculated false discovery rates (FDR) for milk yield (MY) and calving interval (CI) in discovery and validation populations

From: Validation of markers with non-additive effects on milk yield and fertility in Holstein and Jersey cows

   Discovery Validation
Trait No. of tested pairwise interactions P-value threshold Holstein discovery (7055) FDR (%) P-value threshold Jersey validation (3795) FDR (%) No. Same Dir.a
MY 255,255 10−7 3700 0 10−5 165 0 163
CI 9,180 10−4 5 18 0.01 0 NA NA
  1. aNumber of same direction SNP effects in discovery and validation populations