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Table 2 P-value thresholds, number of SNPs with significant dominance effects and corresponding false discovery rates (FDR) for milk yield (MY) and calving interval (CI) in discovery and validation populations

From: Validation of markers with non-additive effects on milk yield and fertility in Holstein and Jersey cows

  Discovery Individual validation Segment validation
Trait P-value threshold Holstein discovery (7055) FDR (%) P-value threshold Jersey validation (3795) FDR (%) No. Same Dir.a P-value threshold Jersey validation (3795) FDR (%)
MY 0.0001 40 102 0.01 1 39 0 0.01 21 1
CI 0.0001 36 113 0.01 3 11 1 0.01 10 3
  1. aNumber of same direction SNP effects in discovery and validation populations