Table 2 P-value thresholds, number of SNPs with significant dominance effects and corresponding false discovery rates (FDR) for milk yield (MY) and calving interval (CI) in discovery and validation populations
Discovery | Individual validation | Segment validation | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
Trait | P-value threshold | Holstein discovery (7055) | FDR (%) | P-value threshold | Jersey validation (3795) | FDR (%) | No. Same Dir.a | P-value threshold | Jersey validation (3795) | FDR (%) |
MY | 0.0001 | 40 | 102 | 0.01 | 1 | 39 | 0 | 0.01 | 21 | 1 |
CI | 0.0001 | 36 | 113 | 0.01 | 3 | 11 | 1 | 0.01 | 10 | 3 |