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Table 1 P-value thresholds, number of SNPs found to be additively significant and corresponding false discovery rates (FDR) for milk yield (MY) and calving interval (CI) in discovery and validation populations

From: Validation of markers with non-additive effects on milk yield and fertility in Holstein and Jersey cows

  Discovery Individual validation Segment validation
Trait P-value threshold Holstein discovery (7055) FDR (%) P-value threshold Jersey validation (3795) FDR (%) No. Same Dir.a P-value threshold Jersey validation (3795) FDR (%)
MY 10−7 715 0 10−5 93 0 64 10−5 413 0
CI 0.0001 136 30 0.01 5 26 5 0.01 73 1
  1. aNumber of same direction SNP effects in discovery and validation populations