Table 1 P-value thresholds, number of SNPs found to be additively significant and corresponding false discovery rates (FDR) for milk yield (MY) and calving interval (CI) in discovery and validation populations
Discovery | Individual validation | Segment validation | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
Trait | P-value threshold | Holstein discovery (7055) | FDR (%) | P-value threshold | Jersey validation (3795) | FDR (%) | No. Same Dir.a | P-value threshold | Jersey validation (3795) | FDR (%) |
MY | 10−7 | 715 | 0 | 10−5 | 93 | 0 | 64 | 10−5 | 413 | 0 |
CI | 0.0001 | 136 | 30 | 0.01 | 5 | 26 | 5 | 0.01 | 73 | 1 |