Breed | Excluded SNPs* | Remaining SNPs | |||||
---|---|---|---|---|---|---|---|
N | MAF < 0.05 | SNP CR < 0.90 | HWE | Het. | Total3 | ||
AL1 | 403 | 3,828 | 2,358 | 39 | 1 | 6,820 | 45,268 |
SA1 | 318 | 4,155 | 2,358 | 45 | 2 | 7,140 | 44,946 |
MAF < 0.15 | SNP CR < 0.90 | HWE | Het. | Total3 | |||
LN1 | 81 | 10,321 | 2,358 | 54 | 156 | 13,436 | 38,650 |
NU1 | 54 | 16,013 | 2,379 | 21 | 242 | 19,233 | 32,853 |
TO1 | 53 | 15,388 | 2,362 | 63 | 870 | 19,233 | 32,863 |
BO1 | 67 | 13,282 | 2,374 | 17 | 185 | 16,438 | 35,648 |
BO2 | 61 | 11,562 | 55 | 81 | 471 | 15,029 | 37,057 |
CA2 | 48 | 9,508 | 147 | 33 | 689 | 13,272 | 38,814 |
RL2 | 66 | 4,695 | 57 | 52 | 274 | 7,980 | 44,106 |