Table 3 QTL regions for the daily feed intake and average daily weight trajectory parameters
Trait | Coefficient | SSR1 | Region1 (Start – End) | Reference SNP ID number | Location1 SNP with largest Impact2 | Candidate gene (Gene Start - Stop)1 | Function |
|---|---|---|---|---|---|---|---|
Daily Feed Intake | Intercept | 3 | 104.93 – 106.74 | rs81374365 | 105,694,951 |  |  |
6 | 50.80 – 53.37 | rs80971368 | 51,843,873 | SIGLEC-5 (51.50 – 51.83) | Host Immune Response | ||
7 | 8.39 – 9.65 | rs80858822 | 9,162,386 | EDN1 (9.15 – 9.16) | Vasoconstriction & Kidney Functions | ||
8 | 30.60 – 31.03 | rs81399022 | 30,934,915 | TBC1D1 (31.01 – 31.05) | Energy Homoestasis | ||
9 | 8.78 – 9.38 | rs331988332 | 8,950,525 | UCP2 (9.15 – 9.16) UCP3 (9.17 – 9.18) | Energy Homoestasis | ||
9 | 65.35 – 66.81 | rs81412363 | 66,001,271 |  |  | ||
9 | 146.99 – 147.55 | rs81344419 | 147,145,126 |  |  | ||
11 | 78.00 – 78.81 | rs81431902 | 78,262,842 | TPP2 (78.24 – 78.32) | Anti-Satiety & Adipogenesis | ||
14 | 16.41 – 17.22 | rs80800316 | 16,678,119 | GLRA3 (16.70 – 16.78) | Behavior | ||
15 | 131.44 – 132.17 | rs81454578 | 131,788,807 | IGFBP5 (131.68 – 131.68) | Glucose Homeostasis | ||
Linear | 2 | 124.53 – 125.09 | rs81474570 | 124,815,799 | CDO1 (124.82 – 124.83) | Cysteine homeostasis | |
3 | 138.21 – 140.07 | rs81336457 | 138,955,525 |  |  | ||
4 | 37.09 – 37.74 | rs80849862 | 37,210,968 | AZIN1 (37.09 – 37.74) | Polyamine Synthesis Regulation | ||
Quadratic | 1 | 25.01 – 27.47 | rs80803840 | 25,469,368 | GPR126 (25.29 – 25.41) | Cell Signaling | |
Average Daily Body Weight | Intercept | 1 | 176.19 – 177.76 | rs80837663 | 176,186,716 | PHLPP1 (176.12 – 176.23) MC4R (178.55 – 178.56) | Insulin Signaling Regulation of Metabolism |
4 | 44.24 – 46.14 | rs80840184 | 44,687,188 | NDUFAF6 (44.87 – 44.91) | Energy Homoestasis | ||
7 | 125.06 – 125.99 | rs80927576 | 125,383,498 | VRK1 (125.27 – 125.31) | Cell Growth & Division | ||
9 | 65.08 – 65.86 | rs81412302 | 65,728,425 |  |  | ||
11 | 9.07 – 9.61 | rs80786591 | 9,216,774 |  |  | ||
15 | 23.81 – 26.38 | rs81451849 | 24,623,255 |  |  | ||
Linear | 5 | 84.01 – 84.74 | rs81325400 | 84,361,428 | STAB2 (84.23 – 84.26) | Clearing of Metabolic Waste | |
Quadratic | 1 | 17.42 – 18.35 | rs80807545 | 17,637,973 |  |  | |
4 | 82.08 – 82.89 | rs80787131 | 82,154,248 | IMPAD1 (82.11 – 82.13) | Formation of Skeletal Elements | ||
6 | 100.55 – 106.32 | rs81316981 | 100,548,492 | CABLES1 (100.63 – 100.80) | Regulator of Cell Proliferation | ||
12 | 52.69 – 53.31 | rs81327396 | 53,063,765 |  |  | ||
15 | 9.03 – 10.57 | rs80840353 | 10,127,793 | KYNU (9.03 – 10.57) | Tryptophan Metabolism |