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Table 3 Results of sire-based QTL mapping analysis and proportion of phenotypic variance explained by each chromosome

From: The genetic architecture of growth and fillet traits in farmed Atlantic salmon (Salmo salar)

 

Harvest Weight

Fillet Weight

Gutted Weight

Deheaded Weight

Fillet Yield

    

covariate$

 

covariate$

  

covariate$

  

covariate$

Chr

F ratio

PVE

F ratio

PVE

F ratio

PVE

F ratio

PVE

F ratio

PVE

F ratio

PVE

F ratio

PVE

F ratio

PVE

F ratio

PVE

1

-

-

1.88*

0.047

-

-

-

-

-

-

-

-

-

-

-

-

-

-

6

-

-

-

-

-

-

1.96*

0

-

-

-

-

-

-

1.90*

n.a.†

1.89*

n.a.†

7

-

-

-

-

-

-

2.03*

0.057

-

-

2.07*

0.06

1.79*

0.037

-

-

-

-

9

-

-

2.04*

0.055

-

-

2.12*

0.056

-

-

2.26*

0.062

-

-

-

-

-

-

10

-

-

2.08*

0.053

-

-

-

-

-

-

-

-

-

-

-

-

-

-

11

2.10*

0.065

2.27*

0.077

2.26**

0.071

1.96*

0.055

-

-

1.91*

0.052

-

-

2.32*

n.a.†

2.31**

n.a.†

12

-

-

-

-

-

-

-

-

-

-

-

-

2.05*

0.078

-

-

-

-

13

2.49**

0.074

2.53**

0.075

1.90*

0.07

2.78**

0.083

-

-

2.67**

0.08

1.81*

0.034

2.37*

n.a.†

2.37**

n.a.†

15

2.12*

0.076

-

-

-

-

2.24*

0.077

-

-

2.43*

0.091

-

-

-

-

-

-

16

2.23*

0.06

-

-

-

-

2.06*

0.048

-

-

2.19*

0.055

-

-

-

-

-

-

17

2.22*

0.082

2.47*

0.096

-

-

2.10*

0.069

-

-

2.37*

0.085

-

-

-

-

-

-

18

2.59**

0.083

2.76**

0.092

-

-

2.89**

0.092

-

-

2.82**

0.089

-

-

-

-

-

-

19

2.00*

0.05

2.62**

0.078

-

-

2.00*

0.046

-

-

2.00*

0.049

-

-

-

-

-

-

20

2.66**

0.09

2.42*

0.077

-

-

2.76**

0.087

-

-

2.76**

0.09

-

-

-

-

-

-

21

-

-

-

-

-

-

1.72*

0.034

1.89*

0.114

-

-

-

-

-

-

-

-

22

-

-

-

-

-

-

-

-

-

-

-

-

1.95*

0.063

-

-

-

-

23

-

-

-

-

1.86*

0.033

-

-

-

-

-

-

-

-

-

-

-

-

24

2.52*

0.068

2.58*

0.07

-

-

2.66*

0.07

2.45*

n.a.†

2.84*

0.079

2.56*

0.066

-

-

-

-

27

1.77*

0.039

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

28

1.88*

0.043

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

29

-

-

1.97*

0.06

-

-

2.31*

0.078

-

-

2.32*

0.079

-

-

-

-

-

-

 

Head Weight

Gut Weight

Body Waste Weight

SalmoFan Scale

Total Waste Weight

   

covariate$

  

covariate$

      

covariate$

Chr

F ratio

PVE

F ratio

PVE

F ratio

PVE

F ratio

PVE

F ratio

PVE

F ratio

PVE

F ratio

PVE

F ratio

PVE

1

1.76*

0.07

-

-

-

-

-

-

-

-

-

-

1.80*

0.068

-

-

3

-

-

-

-

-

-

-

-

-

-

2.30*

0.088

-

-

3.20**

0.154

6

2.12*

0.074

-

-

-

-

-

-

-

-

-

-

2.05*

0.078

-

-

7

-

-

-

-

1.73*

0.044

1.72*

0.048

2.01*

0.063

-

-

2.49*

0.075

-

-

9

2.05*

0.07

-

-

-

-

-

-

-

-

-

-

-

-

-

-

11

1.96*

n.a.†

-

-

-

-

-

-

-

-

-

-

-

-

2.00*

0.099

13

2.72**

0.072

-

-

-

-

-

-

-

-

-

-

2.44*

0.046

1.91*

0.052

16

-

-

-

-

1.98*

0.044

-

-

-

-

-

-

-

-

-

-

17

-

-

-

-

2.16*

0.093

-

-

-

-

2.11*

0.085

-

-

-

-

18

2.11*

0.069

-

-

-

-

-

-

-

-

-

-

1.88*

0.047

-

-

19

2.49**

0.068

-

-

-

-

-

-

-

-

-

-

2.22*

0.033

-

-

20

2.02*

0.067

-

-

2.19**

0.063

-

-

-

-

-

-

1.99*

0.048

-

-

21

-

-

1.72*

n.a.†

-

-

-

-

1.85*

0.03

-

-

1.76*

0.046

-

-

22

-

-

1.90*

0.4

-

-

-

-

-

-

-

-

-

-

-

-

24

2.24*

0.068

-

-

3.03**

0.094

3.13**

0.126

-

-

-

-

-

-

-

-

25

-

-

1.97*

0.4

-

-

-

-

-

-

2.04*

0.067

-

-

-

-

  1. *: chromosome-wide significance at p < 0.05; **: genome-wide significance at p < 0.05; PVE: proportion of phenotypic variance for half-sib analysis
  2. †: Due to the MSEfull value being equal to MSEreduced
  3. $: Harvest weight was fitted as covariate