Table 5 Analysis of multi-species gene families in Rosaceae
Type of gene family | Average number of members | Number of gene family | Number of genes | Members of largest family | Average nucleotide divergence | Ave_ Ka/Ks | PAML (* + **|All) | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
A | M | Pc | Pr | S | C | |||||||
APc | 1 | - | 1 | - | - | - | 1 | 2 | 2 | 0.341 | 0.463 | - |
APcPr | 2 | - | 1 | 1 | - | - | 1 | 4 | 4 | 0.169 | 0.660 | 1|1 |
AMPcPr | 17.8 | 5.6 | 5.3 | 9.2 | - | - | 28 | 1060 | 189 | 0.251 | 0.525 | 14|18 |
AMPcPrS | 11.1 | 5.9 | 6.3 | 6.1 | 3 | - | 14 | 453 | 119 | 0.269 | 0.396 | 7|10 |
APcPrS | 1 | - | 1 | 1 | 1 | - | 1 | 4 | 4 | 0.157 | 0.216 | 0|1 |
AMPc | 1.5 | 1 | 1 | - | - | - | 2 | 7 | 4 | 0.197 | 0.481 | 1|2 |
APr | 8.1 | - | - | 3.5 | - | - | 37 | 427 | 131 | 0.150 | 0.649 | 20|26 |
AMPr | 1.7 | 1.3 | - | 1.7 | - | - | 3 | 14 | 6 | 0.167 | 0.374 | 1|3 |
APrS | 49 | - | - | 45 | 5 | - | 1 | 99 | 99 | 0.534 | 0.577 | - |
PcPr | - | - | 1 | 1 | - | - | 1 | 2 | 2 | 0.238 | 0.534 | - |
MPcPr | - | 5 | 3.5 | 1 | - | - | 2 | 19 | 12 | 0.310 | 0.529 | 1|2 |
MPc | - | 2.4 | 2.5 | - | - | - | 48 | 235 | 36 | 0.109 | 0.637 | 19|20 |
MPcS | - | 2 | 1.7 | - | 1 | - | 3 | 14 | 6 | 0.234 | 0.499 | 1|3 |
MPr | - | 1 | - | 1 | - | - | 1 | 2 | 2 | 0.228 | 0.374 | - |
AMPcPrSC | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 6 | 6 | 0.207 | 0.091 | 0|1 |
MPcSC | - | 1 | 1 | - | 1 | 1 | 1 | 4 | 4 | 0.225 | 0.199 | 0|1 |