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Table 5 Genes detected in other regions and the most likely SNPs in the regions

From: Genome-wide association studies (GWAS) identify a QTL close to PRKAG3 affecting meat pH and colour in crossbred commercial pigs

Regions

Most promising SNP

Position

RSQ #3

Candidate genes in the region

1_35Mb

H3GA0001381

35702627

0.915

13 genes with 8 unknown ones: CTGF, ENPP1, ENPP3, ARG1, 7SK

5_107Mb

MARC0017490

107260629#1

0.975

1 gene: SYT1

ALGA0034179

107073577#1

0.869

9_147Mb

ALGA0102900

147079835#2

0.927

3 genes with 2 unknown ones: U6

ALGA0101542

147108528#2

0.906

ASGA0045220

147280710#2

0.869

16_73Mb

ALGA0091417

73416075

0.841

1 gene: 5S rRNA

X_1Mb

ASGA0083984

1141455

0.998

3 genes with 1 unknown one: OBP, CH242-123G14.1

  1. #1The LD (r2) between the two SNPs is 0.75; #2The LD (r2) between the SNPs ranges from 0.63 to 0.89; #3the R-squared, means the percentage of the window GEBV variance explained by the single SNP.