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Table 4 Correlation coefficients for estimated relationships and inbreeding coefficients (Yang method)

From: The effect of rare alleles on estimated genomic relationships from whole genome sequence data

 

Estimated relationships

Inbreeding coefficients

 

First degree

Second degree

Less-related

Depth1

Depth2

Depth4

A ped ~ G SNP5+

0.450a,b

0.372a,b

0.511a,b

0.395a,b

0.595a,b

0.721a,b

A ped ~ G WGS5+

0.487a,b

0.361a,b

0.512a,b

0.392a,b

0.579a,b

0.710a,b

G WGS5+ ~ G SNP5+

0.973a,b

0.982a,b

0.979a,b

0.979a,b

0.985a,b

0.985a,b

A ped ~ G SNP1+

0.335a,b

0.351a,b

0.516a,b

0.391a,b

0.601a,b

0.723a,b

A ped ~ G WGS1+

0.212b

0.286a,b

0.514a,b

0.360a,b

0.570a,b

0.689a,b

G WGS1+ ~ G SNP1+

0.948a,b

0.967a,b

0.966a,b

0.933a,b

0.936a,b

0.946a,b

A ped ~ G SNP1_5

−0.162b

0.045b

0.374a,b

0.122b

0.448a,b

0.501a,b

A ped ~ G WGS1_5

−0.170b

0.022b

0.351a,b

0.035b

0.142b

0.198b

G WGS1_5 ~ G SNP1_5

0.950 a,b

0.857a,b

0.676a,b

0.515a,b

0.487a,b

0.537a,b

G SNP1+ ~ G SNP5+

0.978a,b

0.995a

0.999a

0.999a

0.999a

0.999a

G WGS1+ ~ G WGS5+

0.888a,b

0.972a,b

0.989a,b

0.965a,b

0.969a,b

0.978a,b

G SNP5+ ~ G SNP1_5

0.567a,b

0.587a,b

0.555a,b

0.446a,b

0.467a,b

0.588a,b

G WGS5+ ~ G WGS1_5

0.503a,b

0.647a,b

0.600a,b

0.263a,b

0.185b

0.315a,b

G SNP1+ ~ G SNP1_5

0.725a,b

0.661a,b

0.593a,b

0.488a,b

0.494a,b

0.611a,b

G WGS1+ ~ G WGS1_5

0.844a,b

0.808a,b

0.714a,b

0.507a,b

0.423a,b

0.505a,b

  1. a,bwhere ameans significantly different from 0 and bsignificantly different from 1 (P-value ≤0.05).