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Table 3 Descriptive statistics (Yang method)

From: The effect of rare alleles on estimated genomic relationships from whole genome sequence data

 

Min

Mean

Max

Var

First degree relationships

    

A ped

0.503

0.548

0.663

0.0014

G SNP5+

0.368

0.464

0.603

0.0026

G SNP1+

0.355

0.453

0.617

0.0032

G SNP1_5

0.069

0.315

1.055

0.0367

G WGS5+

0.339

0.427

0.555

0.0023

G WGS1+

0.293

0.389

0.543

0.0033

G WGS1_5

0.128

0.275

0.692

0.0154

Second degree relationships

    

A ped

0.250

0.302

0.406

0.0013

G SNP5+

0.100

0.216

0.440

0.0038

G SNP1+

0.094

0.209

0.445

0.0038

G SNP1_5

−0.022

0.113

0.517

0.0093

G WGS5+

0.075

0.200

0.402

0.0032

G WGS1+

0.059

0.177

0.382

0.0031

G WGS1_5

0.001

0.105

0.402

0.0048

Less-related

    

A ped

0.000

0.056

0.245

0.0019

G SNP5+

−0.135

−0.015

0.382

0.0021

G SNP1+

−0.126

−0.015

0.386

0.0019

G SNP1_5

−0.112

−0.012

0.432

0.0011

G WGS5+

−0.113

−0.013

0.349

0.0018

G WGS1+

−0.092

−0.010

0.321

0.0013

G WGS1_5

−0.075

−0.001

0.599

0.0008

Inbreeding coefficients

    

A ped

0.000

0.027

0.163

0.0009

G SNP5+

−0.244

−0.009

0.109

0.0023

G SNP1+

−0.234

−0.009

0.108

0.0021

G SNP1_5

−0.107

−0.014

0.176

0.0011

G WGS5+

−0.215

−0.037

0.068

0.0017

G WGS1+

−0.200

−0.060

0.045

0.0012

G WGS1_5

−0.273

−0.131

−0.021

0.0015